PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g07960
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 227aa    MW: 26014.9 Da    PI: 5.3627
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g07960genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.33.7e-101521921055
                HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                r+RR+riN+++ +L++l+ +      +K++ +++Le+Av+Y+k Lq
  Tp2g07960 152 RKRRERINDRLRTLQSLVQNG-----TKVDISTMLEEAVHYVKFLQ 192
                9*****************987.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.107142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-13147207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-10148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-11148201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.74E-11151196No hitNo description
PfamPF000101.5E-7152192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MENEAFVDGE LESLLGMFNF DQCSSDDSNF YNDQHDYPNE IDVFSSNDYF SFATILQGNY  60
PAVQDDSNQQ TNLYIDSRQE LVKPRKKQKL SSESNLVTEP KTTWRDGQNI SSFNRSDEEK  120
ASGSETNTSK SLKRKAKSNI GIATDPQSLY ARKRRERIND RLRTLQSLVQ NGTKVDISTM  180
LEEAVHYVKF LQLQIKLLSS DDLWMYAPLA HNGLNMGLHH NLLSRVM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131137LKRKAKS
2132154KRKAKSNIGIATDPQSLYARKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g07960
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0230305e-41AB023030.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K24F5.
GenBankCP0026885e-41CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_680385.11e-132basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RefseqXP_024013157.11e-132transcription factor bHLH139
SwissprotQ3E7L71e-133BH139_ARATH; Transcription factor bHLH139
TrEMBLA0A178UKI51e-130A0A178UKI5_ARATH; Uncharacterized protein
STRINGAT5G43175.11e-131(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41322257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43175.11e-121bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]