PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g08040
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family NF-YC
Protein Properties Length: 128aa    MW: 14609 Da    PI: 10.3667
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g08040genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC51.42.4e-169881997
      NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97
                e+P++r+kki+k d+d+++i +ea  l++ + elf+  l+ +s + a e+kr+t++   +  av+r + + dfl+d  p
  Tp2g08040  9 PEFPITRVKKIMKLDKDINKINSEALHLVTYSTELFLHFLAEKSSVVAAEKKRKTVNLDHLRIAVKRHQpTSDFLLDSLP 88
               589**************************************************************9976489*****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008086.9E-211073IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471131.41E-171186IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.6E-201188IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MAEEETIRPE FPITRVKKIM KLDKDINKIN SEALHLVTYS TELFLHFLAE KSSVVAAEKK  60
RKTVNLDHLR IAVKRHQPTS DFLLDSLPLP SSQPVRVAKT VSEKKPPPVG TRRIDDFFNK  120
GKAKAEDF
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g08040
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7971401e-138KC797140.1 Brassica napus transcription factor subunit NF-YC13 (NF-YC13) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006403274.27e-80nuclear transcription factor Y subunit gamma
TrEMBLV4LQG01e-78V4LQG0_EUTSA; Uncharacterized protein
STRINGXP_006403274.12e-79(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128602530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.11e-56nuclear factor Y, subunit C13