PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g08910
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bZIP
Protein Properties Length: 327aa    MW: 35916 Da    PI: 5.5534
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g08910genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_154.33e-17243300259
                XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                ++ +r+rr++kNRe+A rsR+RK+a++ eLe  +++Le+eN++L ke+ee +ke +  
  Tp2g08910 243 AAAQRQRRMIKNRESAARSRERKQAYQVELESLAAKLEEENEMLSKEIEEKRKERYHK 300
                5789**********************************************99998754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.0E-13242306IPR004827Basic-leucine zipper domain
PfamPF001702.6E-16243302IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.438244296IPR004827Basic-leucine zipper domain
CDDcd147075.67E-19246292No hitNo description
SuperFamilySSF579592.75E-10246298No hitNo description
Gene3DG3DSA:1.20.5.1709.1E-14247298No hitNo description
PROSITE patternPS000360249264IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MASFKVMHSS SSRNSDLSRR IPSSSVSSSS SSIRPQQFRR DPNADQSRIT GGYGGRNDGY  60
SPTAMTVEGI LHDTFASDPP ATESSLLDAS ITLMDAPTPM EITTVSDVDR SGGDRGGGGG  120
GTETRGKSVD EVWRDIVSGE GKGMKEETQE EMMTLEDFLA KATGGDAAAA GGNGGVESDD  180
MDVKIPPERL NYGFDHSAPP HNPFQMIDKV EGSIVAFGNG LDVYGGGARG KRARVMVEPL  240
DKAAAQRQRR MIKNRESAAR SRERKQAYQV ELESLAAKLE EENEMLSKEI EEKRKERYHK  300
LMEFVIPVVE KPQQQPRFLR RIRSLEW
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g08910
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3534790.0AK353479.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-45-A18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006403144.11e-175G-box-binding factor 4
SwissprotP427774e-80GBF4_ARATH; G-box-binding factor 4
TrEMBLE4MY821e-174E4MY82_EUTHA; mRNA, clone: RTFL01-45-A18
TrEMBLV4LQ581e-174V4LQ58_EUTSA; Uncharacterized protein
STRINGXP_006403144.11e-175(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38522855
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44080.11e-135bZIP family protein