PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g11170
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family M-type_MADS
Protein Properties Length: 168aa    MW: 19633.9 Da    PI: 10.7507
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g11170genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.91.3e-181157349
               --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
     SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
               ien + rqvtfskR+ g++KKA  L  LC++evav+i s+ g+ y +
  Tp2g11170 11 IENRITRQVTFSKRKVGLFKKADTLARLCNVEVAVLINSPAGRPYVF 57
               9****************************************987766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.9E-28160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.404161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.01E-23276IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-17323IPR002100Transcription factor, MADS-box
PfamPF003198.8E-201157IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-172338IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-173859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MGRKKIEINY IENRITRQVT FSKRKVGLFK KADTLARLCN VEVAVLINSP AGRPYVFGSP  60
CFSSVVGRLR NPYPRRSERF SSSLKQTRIL KSRAKLDSLT EELKRHKEHE KVLKKRQEET  120
LENYDLKEIN VDLKLEGFVA FKEKLEAVRD NMKRKRMEME ASSSLLML
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g11170
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006398327.12e-48agamous-like MADS-box protein AGL29
TrEMBLV4KPE94e-47V4KPE9_EUTSA; Uncharacterized protein
STRINGBostr.15654s0054.1.p1e-51(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1548036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47760.13e-48AGAMOUS-like 102