PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g12530
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family G2-like
Protein Properties Length: 287aa    MW: 31129.6 Da    PI: 6.0096
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g12530genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like108.14.6e-341569155
    G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
               k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  Tp2g12530 15 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 69
               79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.3031272IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-321470IPR009057Homeodomain-like
SuperFamilySSF466896.45E-181469IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-251570IPR006447Myb domain, plants
PfamPF002491.1E-91768IPR001005SANT/Myb domain
PfamPF143791.5E-23101147IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MEADNGGNNS SHASKQRLRW THELHERFVD AVAQLGGPDR ATPKGVLRVM GVQGLTIYHV  60
KSHLQKYRLA KYLPDSSSEG KKADKKESGD ALSGLDGSSG MQITEALKLQ MEVQKRLHEQ  120
LEVQRQLQLR IEAQGKYLKK IIEEQQRLSG VLGEPSGPVT GESDPTTPAP TSESPLQDKS  180
GKEGGPDKSL SVDESLSSYR DPLTPDSGCN IGSQDESAGE ERSSKKPRLV RGGAAGYTPE  240
MVVAHPILES GLNASYHRSD HALAFDHPST SLLGAEDELD KVSRDDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-241572158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-241572158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-241572158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-241572158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00252DAPTransfer from AT2G01060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g12530
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0847250.0AY084725.1 Arabidopsis thaliana clone 115924 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018439742.10.0PREDICTED: myb family transcription factor PHL7
SwissprotQ9SJW00.0PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLR0FQU20.0R0FQU2_9BRAS; Uncharacterized protein
STRINGXP_006291618.10.0(Capsella rubella)
STRINGXP_010424838.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87532536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.11e-166G2-like family protein