PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp2g13100

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

C2H2

Protein Properties

Length: 467aa MW: 51666.6 Da PI: 5.376

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp2g13100	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.1	6.5e-05	126	148	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg++F++ ++ H ++ Tp2g13100 126 FECPICGTPFKSEEEVSAHVESC 148 89*****************8876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF143503	2.22E-18	181	248	IPR018997	PUB domain
CDD	cd09212	1.05E-20	184	267	No hit	No description
Pfam	PF09409	4.8E-18	184	255	IPR018997	PUB domain
SMART	SM00580	3.1E-23	185	252	IPR018997	PUB domain
SuperFamily	SSF54236	2.43E-12	333	442	IPR029071	Ubiquitin-related domain
Gene3D	G3DSA:3.10.20.90	2.5E-7	358	441	No hit	No description
PROSITE profile	PS50033	10.139	358	442	IPR001012	UBX domain
Pfam	PF00789	1.9E-4	360	437	IPR001012	UBX domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0050832	Biological Process	defense response to fungus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence Send to blast
MDDVRDKLKG FMKKVNLSSS SGKFKGSGRV LGSSSSSGPV NPIQNRFNTP QAPNPNPTPR 60 PTKPSPSPPS SGSSSAPLPE KPVSSWSTRN TDPDPVRAPP QDGFDAYGAL ITSSNRSQNG 120 YSLEMFECPI CGTPFKSEEE VSAHVESCLE NTNGDESASE KDNDNDKSEM EKLVVVYLSG 180 KPTESSIDVL LRLLKNIVKE PENGKFRKIR MSNAKIKEAI GDVAGGVELL ELVGFELKEE 240 NEEIWAVMEV PGQEQSQLIN KVVGILENRK TDLPRKDEIS GSSAAEEPVA PKKIDREIRV 300 FFSVAENVAS RIEVPDSFYS LSADEIKREA DLRRKKIAES QLLIPRSYKE KQAKAARRRY 360 KRSMIRVQFP DGVVLQGVFA PWEPTIALYE FVSSALKEPS LQFELLDPVL VKRRVIPRTP 420 APGQKPRTLE DEELVPSALI KFRPIETDSL VFTGLCNQLL EISEPLS

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence Send to blast

MDDVRDKLKG FMKKVNLSSS SGKFKGSGRV LGSSSSSGPV NPIQNRFNTP QAPNPNPTPR  60
PTKPSPSPPS SGSSSAPLPE KPVSSWSTRN TDPDPVRAPP QDGFDAYGAL ITSSNRSQNG  120
YSLEMFECPI CGTPFKSEEE VSAHVESCLE NTNGDESASE KDNDNDKSEM EKLVVVYLSG  180
KPTESSIDVL LRLLKNIVKE PENGKFRKIR MSNAKIKEAI GDVAGGVELL ELVGFELKEE  240
NEEIWAVMEV PGQEQSQLIN KVVGILENRK TDLPRKDEIS GSSAAEEPVA PKKIDREIRV  300
FFSVAENVAS RIEVPDSFYS LSADEIKREA DLRRKKIAES QLLIPRSYKE KQAKAARRRY  360
KRSMIRVQFP DGVVLQGVFA PWEPTIALYE FVSSALKEPS LQFELLDPVL VKRRVIPRTP  420
APGQKPRTLE DEELVPSALI KFRPIETDSL VFTGLCNQLL EISEPLS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ifw_A	2e-12	313	442	23	146	Tether containing UBX domain for GLUT4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	355	363	ARRRYKRSM

Functional Description ? help Back to Top
Source	Description
UniProt	Facilitates the interaction of SYP31 and CDC48A, thereby regulating an CDC48A membrane-associated function (Ref.8). Appears to act as a negative regulator mediating the powdery mildew-plant interaction (PubMed:19176722, PubMed:23301616). {ECO:0000269\|PubMed:19176722, ECO:0000269\|PubMed:23301616, ECO:0000269\|Ref.8}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp2g13100

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in response to powdery mildew and by benzothiadiazole (BTH) treatment. {ECO:0000269\|PubMed:19176722}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK118911	0.0	AK118911.1 Arabidopsis thaliana At2g01650 mRNA for unknown protein, complete cds, clone: RAFL21-25-I03.
GenBank	AY572782	0.0	AY572782.1 Arabidopsis thaliana CDC48-interacting UBX-domain protein (PUX2) mRNA, complete cds.
GenBank	BT005408	0.0	BT005408.1 Arabidopsis thaliana clone U51117 unknown protein (At2g01650) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006291059.1	0.0	plant UBX domain-containing protein 2
Swissprot	Q9ZU93	0.0	PUX2_ARATH; Plant UBX domain-containing protein 2
TrEMBL	R0FNB3	0.0	R0FNB3_9BRAS; Uncharacterized protein
STRING	XP_006291059.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9835	16	18

Publications ? help Back to Top
Suzuki T,Park H,Till EA,Lennarz WJ The PUB domain: a putative protein-protein interaction domain implicated in the ubiquitin-proteasome pathway. Biochem. Biophys. Res. Commun., 2001. 287(5): p. 1083-7 [PMID:11587532] Rancour DM,Park S,Knight SD,Bednarek SY Plant UBX domain-containing protein 1, PUX1, regulates the oligomeric structure and activity of arabidopsis CDC48. J. Biol. Chem., 2004. 279(52): p. 54264-74 [PMID:15498773] Chandran D,Rickert J,Cherk C,Dotson BR,Wildermuth MC Host cell ploidy underlying the fungal feeding site is a determinant of powdery mildew growth and reproduction. Mol. Plant Microbe Interact., 2013. 26(5): p. 537-45 [PMID:23301616]