PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp2g13370

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

BBR-BPC

Protein Properties

Length: 271aa MW: 30786 Da PI: 7.0989

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp2g13370	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	26	2.5e-08	1	88	1	81
GAGA_bind 1 mdddgsrernkgyyepa.aslkenlglqlmssiaerdaki....rernlalsekkaavaerd......maflqrdkalaernkalverdnkl 81 mdddg+ n+gyyep +++++ ++l lms++ + ++++ re nl +++++++++ ++ m++ ++++ +n++++ +l Tp2g13370 1 MDDDGF--HNWGYYEPMaTTFEHSVDLPLMSTV-DNNTEPfllgREPNL-MIGSNSSYHMQNqetsipMDYSWINNMVPPKNNNVMSETAAL 88 9999..59*9999**********.7788888****.******9998888899999555555555777766554433 PP
2	GAGA_bind	254.9	5e-78	117	271	142	301
GAGA_bind 142 eeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSv 241 + ++++k+++ +++ +++k++ +++kk+++++ +v+ ++++r+k+ kksid+v+ng +D+s lPvPvC+CtG+++qCY+WG GGWqSaCCtt+iS+ Tp2g13370 117 QPNEKRKMESGTATITTTKTTMLQNPKKERDVT--NVQ--HQQQRVKSVKKSIDVVINGEIMDISVLPVPVCTCTGSPQQCYRWGPGGWQSACCTTNISI 212 334455555556666666666667777744333..344..44489***************************************************** PP GAGA_bind 242 yPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 yPLP+s krr aRiagrKmSqgafkk+LekLa++Gy++ n++DLk+hWA+HGtnkfvtir Tp2g13370 213 YPLPMSIKRR-ARIAGRKMSQGAFKKVLEKLASDGYNFRNAIDLKSHWARHGTNKFVTIR 271 *99876.9*********************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06217	1.7E-80	1	271	IPR010409	GAGA-binding transcriptional activator
SMART	SM01226	8.3E-120	1	271	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MDDDGFHNWG YYEPMATTFE HSVDLPLMST VDNNTEPFLL GREPNLMIGS NSSYHMQNQE 60 TSIPMDYSWI NNMVPPKNNN VMSETAALDL KQFETAFDSS WFEENLVPPL LEDEIIQPNE 120 KRKMESGTAT ITTTKTTMLQ NPKKERDVTN VQHQQQRVKS VKKSIDVVIN GEIMDISVLP 180 VPVCTCTGSP QQCYRWGPGG WQSACCTTNI SIYPLPMSIK RRARIAGRKM SQGAFKKVLE 240 KLASDGYNFR NAIDLKSHWA RHGTNKFVTI R

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269\|PubMed:14731261, ECO:0000269\|PubMed:15722463}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp2g13370

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HM222924	0.0	HM222924.1 Thellungiella parvula phosphatase, cyclin J18, clathrin assembly protein-related protein, BPC1, SGR5/ATIDD15, leucine-rich receptor kinase, endomemebrane protein 70, salt overly sensitive 1, glutamate decarboxylae 4, oligopeptide transport protein, peptide transporter, and NADH-ubiquinone oxidoreductase B18 genes, complete cds; and unknown genes.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020880017.1	1e-123	protein BASIC PENTACYSTEINE1
Refseq	XP_020880018.1	1e-123	protein BASIC PENTACYSTEINE1
Swissprot	Q9SKD0	1e-119	BPC1_ARATH; Protein BASIC PENTACYSTEINE1
TrEMBL	E5F6Z9	0.0	E5F6Z9_9BRAS; BPC1
STRING	Bostr.0556s0021.1.p	1e-129	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2893	27	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01930.2	1e-103	basic pentacysteine1

Publications ? help Back to Top
Oh DH, et al. Genome structures and halophyte-specific gene expression of the extremophile Thellungiella parvula in comparison with Thellungiella salsuginea (Thellungiella halophila) and Arabidopsis. Plant Physiol., 2010. 154(3): p. 1040-52 [PMID:20833729]