PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g13730
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family B3
Protein Properties Length: 240aa    MW: 27764.1 Da    PI: 9.4242
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g13730genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.27.4e-196101198
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                f+++++++++l s++l+lp++fa+++ + k  + +++l d++g +W   +   + +g +++tk+W++F+ an+L+ g+++++++++r+++ +++k+ +
  Tp2g13730   6 FLTITLKHYMLMSRQLRLPRPFARDNRITK--GEKMILVDKHGVKWPSFVASANEQGDFYITKNWNSFCVANELDLGETFTLEFVRREGTIPMLKFSK 101
                77888999******************8875..458***************99999999***************************9999988888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.3E-16399IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.08E-173100IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.9E-226103IPR003340B3 DNA binding domain
PfamPF023621.9E-186100IPR003340B3 DNA binding domain
CDDcd100178.29E-16693No hitNo description
PROSITE profilePS5086313.1976102IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MKQNNFLTIT LKHYMLMSRQ LRLPRPFARD NRITKGEKMI LVDKHGVKWP SFVASANEQG  60
DFYITKNWNS FCVANELDLG ETFTLEFVRR EGTIPMLKFS KAEVKVNKYN PILVKACVKT  120
YACIKIVKMN CIQIEQTPFH VLQETVDASR DEEEEGQKES ETRIQKRARV SLEGGPSYRT  180
WASDKSSADQ EKSLRSCPIS CQVTKVKQSI VDILTDLRRF QSELVVKQQN LDALLHELMR
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g13730
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2812623
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31620.14e-57B3 family protein