PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g14790
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bZIP
Protein Properties Length: 177aa    MW: 20599.8 Da    PI: 5.7045
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g14790genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.23.6e-1383141563
                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                +++rr+ +NRe+ArrsR RK+  ++eL   v  L +eN  L+++l++ +++ +++ +e+
  Tp2g14790  83 RKQRRMLSNRESARRSRMRKQRHLDELWSQVIRLRNENNCLIDKLNRVSETQDSVLKEN 141
                79************************************************999888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.8E-1479143IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.79581144IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.99E-1283132No hitNo description
PfamPF001704.7E-1183141IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.6E-1083155No hitNo description
CDDcd147021.31E-1784132No hitNo description
PROSITE patternPS00036086101IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MVPAEITGYY QYLSPENLTT VPAEFNIVNM PSSPTSSSSL NYLNDLINSN HYSSSSKGQD  60
LMMSNNSNSD EDHHQSIIIL DERKQRRMLS NRESARRSRM RKQRHLDELW SQVIRLRNEN  120
NCLIDKLNRV SETQDSVLKE NSKLKEEASD LRQLVCELKS NKNNDDNNSF IREFEDN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195102RRSRMRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00262DAPTransfer from AT2G04038Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g14790
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0071781e-147AC007178.6 Arabidopsis thaliana chromosome 2 clone F3L12 map mi320, complete sequence.
GenBankCP0026851e-147CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013613647.11e-105PREDICTED: basic leucine zipper 43
TrEMBLA0A0D3AVT91e-103A0A0D3AVT9_BRAOL; Uncharacterized protein
STRINGBo2g138370.11e-104(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28922469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04038.11e-74basic leucine-zipper 48