PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g15210
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family Trihelix
Protein Properties Length: 389aa    MW: 44737.3 Da    PI: 6.7494
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g15210genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix82.74.9e-2673156286
   trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                W ++e++ Li++rrem++ ++++k++k+lW+++s kmre+gf rsp +C++kw+n+ k++kk k+++k+     s ++++++++e
  Tp2g15210  73 WVQDETRILITLRREMDSLFNTSKSNKHLWQQISTKMREKGFDRSPAMCTDKWRNMLKEFKKAKQQDKGS-GSGSAKMSHYKEIE 156
                *******************************************************************986.566679*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-464134IPR009057Homeodomain-like
PROSITE profilePS500908.57165129IPR017877Myb-like domain
SMARTSM007171.3E-569131IPR001005SANT/Myb domain
SuperFamilySSF466894.93E-570159IPR009057Homeodomain-like
CDDcd122031.97E-2771136No hitNo description
PfamPF138371.1E-2072157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MFVSDKPRSP IDFYKDDNNP SPTSREINMM IDVTSNGDLQ APNQHQHQHQ IILGESSSED  60
HEIKAPKKRA ETWVQDETRI LITLRREMDS LFNTSKSNKH LWQQISTKMR EKGFDRSPAM  120
CTDKWRNMLK EFKKAKQQDK GSGSGSAKMS HYKEIEDILR ERNKKMTLYK SPTTPSSVAK  180
VASFMQFTEK GFEDSGMSFA SVEASGRPTL NLERQLDHDG HPLAIVSADA VTANGVPPWN  240
WRETSGNGSD GQPFVGKIIT LKFGDYTRRV GIDGTAEAIK EAIKSAFRLR TRRAFWLEDE  300
EQVVRSLDRD MPLGNYTLHV DEGIAVRVCH YDESDPLPVH QEEKIFYMED DYRDFLVRRG  360
WTCLREFDGF RNIDNMDDLQ PGVLYRGMR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A2e-4367154186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00380DAPTransfer from AT3G25990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g15210
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0723700.0AB072370.1 Arabidopsis thaliana mRNA for transcription factor GT-4, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006395605.10.0trihelix transcription factor GT-4 isoform X4
SwissprotQ9LU920.0TGT4_ARATH; Trihelix transcription factor GT-4
TrEMBLV4MMW60.0V4MMW6_EUTSA; Uncharacterized protein
STRINGXP_006395605.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28912768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25990.10.0Trihelix family protein