PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp2g15740

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

LBD

Protein Properties

Length: 121aa MW: 13793.1 Da PI: 8.5728

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp2g15740	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.6	5.7e-40	5	104	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrr+C+kdC+++pyfp ++p+kfa++h+++Ga nv+k+l++lp ++r +a++sl++eA++r++dPvyG+vgvi lq q++++++ la++++e Tp2g15740 5 RCAACKYLRRRCPKDCIFSPYFPPNDPEKFACIHRIYGAGNVSKMLQQLPLQTRAEAVESLCFEAKCRVEDPVYGCVGVIYLLQTQIQKTETLLAKTQAE 104 6*******************************************************************************************99999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.867	4	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.1E-39	5	102	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016020	Cellular Component	membrane

Sequence ? help Back to Top
Protein Sequence Length: 121 aa Download sequence Send to blast
MNPKRCAACK YLRRRCPKDC IFSPYFPPND PEKFACIHRI YGAGNVSKML QQLPLQTRAE 60 AVESLCFEAK CRVEDPVYGC VGVIYLLQTQ IQKTETLLAK TQAEIAIAQF KHSQTQNSDF 120 M

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-36	6	105	12	111	LOB family transfactor Ramosa2.1
5ly0_B	1e-36	6	105	12	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp2g15740

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473846	1e-123	AB473846.1 Arabidopsis thaliana ASL13 mRNA for ASYMMETRIC LEAVES2-like 13 protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006395539.1	2e-79	LOB domain-containing protein 24
Swissprot	P59468	1e-78	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	V4K5H8	4e-78	V4K5H8_EUTSA; Uncharacterized protein
STRING	XP_006395539.1	7e-79	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	6e-81	LOB domain-containing protein 24