PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g18550
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family GRAS
Protein Properties Length: 500aa    MW: 56261.9 Da    PI: 6.7338
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g18550genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS453.61.2e-1381305002374
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                +  L++cA+a+s++dl +a++++++l+ ++s +g+p++Rl ay++e+L a+la+s+s++y+al+  +++   s+e l+++++++ev+P++kf+++ aN a
  Tp2g18550 130 RADLVSCAKAMSENDLMMARSMMEKLRLMVSVSGEPIERLGAYLLEGLVAQLASSGSSIYRALNRCPEP--ASTELLSYMHILYEVCPYFKFGYMSANGA 227
                678************************************************************666665..499************************** PP

       GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199
                I ea+++e+rvHiiDf+i+qG QW++L+qa+a+Rp+gpp++RiTg+++ +s   +   l+ +g+rLak+A++++vpfefn  v+ +++++++++L v++g
  Tp2g18550 228 IAEAMKEENRVHIIDFQIGQGSQWVTLIQAFAARPGGPPRIRITGIDDTTSAyaRGGGLSIVGNRLAKLAKQFNVPFEFNS-VSVSVSEVKPKNLGVRSG 326
                ************************************************998899999************************.7999************** PP

       GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299
                EalaVn+++ lh+++desvs+e++rd++L++vkslsPkvv++veqe+++n++ F+ rf e+++yy a+f+s++++lpr++++ri+vE+++l+r++vn++a
  Tp2g18550 327 EALAVNFAFVLHHMPDESVSTENHRDRLLRMVKSLSPKVVTLVEQESNTNTAAFFPRFKETMDYYDAMFESIDVTLPRNHKQRINVEQHCLARDVVNIIA 426
                **************************************************************************************************** PP

       GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                cega+r+erhe l+kWr+r+++aGF+p+pls  +++++k+llr+++++ yr+ee++g+l+lgW++r Lv+ +aW+
  Tp2g18550 427 CEGADRVERHELLGKWRSRFGMAGFTPYPLSPLVNSTIKSLLRNYSDK-YRLEEREGALYLGWMKRDLVASCAWK 500
                **********************************************55.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.583103481IPR005202Transcription factor GRAS
PfamPF035144.3E-136130500IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MYKHPRQEIE AYSLPPFDAN SVGKRRYIPV HNSRKRYCTP ESSSPDSPAY DLVSTATVLV  60
SHNNSVYEDT SGSCVTDDFN DKIKELETVM MGPDSFDLVF DYNDSFDSTS CQETNTWRST  120
LEAVSRRDLR ADLVSCAKAM SENDLMMARS MMEKLRLMVS VSGEPIERLG AYLLEGLVAQ  180
LASSGSSIYR ALNRCPEPAS TELLSYMHIL YEVCPYFKFG YMSANGAIAE AMKEENRVHI  240
IDFQIGQGSQ WVTLIQAFAA RPGGPPRIRI TGIDDTTSAY ARGGGLSIVG NRLAKLAKQF  300
NVPFEFNSVS VSVSEVKPKN LGVRSGEALA VNFAFVLHHM PDESVSTENH RDRLLRMVKS  360
LSPKVVTLVE QESNTNTAAF FPRFKETMDY YDAMFESIDV TLPRNHKQRI NVEQHCLARD  420
VVNIIACEGA DRVERHELLG KWRSRFGMAG FTPYPLSPLV NSTIKSLLRN YSDKYRLEER  480
EGALYLGWMK RDLVASCAWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-651335008375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g18550
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3525330.0AK352533.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-04-F03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013621066.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_013621067.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_013621069.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_013725211.10.0scarecrow-like transcription factor PAT1
RefseqXP_013725212.10.0scarecrow-like transcription factor PAT1
RefseqXP_013725213.10.0scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A0D3AWS70.0A0A0D3AWS7_BRAOL; Uncharacterized protein
TrEMBLA0A3P6D6580.0A0A3P6D658_BRAOL; Uncharacterized protein
STRINGBo2g149670.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62128141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]