PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g18670
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB_related
Protein Properties Length: 420aa    MW: 48139.3 Da    PI: 5.7951
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g18670genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.72.6e-08355410147
                      TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqky 47 
                      r+ WT eE+e l+ +v+++  +      W++I ++      ++Rt+ ++k++w++ 
        Tp2g18670 355 RLFWTSEEEEMLKVGVEKFSAEanknmPWRKILEMGEkvfhETRTPADLKDKWRNM 410
                      678*****************************99877*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.758350411IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.1E-8350411IPR009057Homeodomain-like
SuperFamilySSF466891.56E-9353411IPR009057Homeodomain-like
CDDcd116605.07E-10358411No hitNo description
PfamPF002492.1E-5358410IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MRTKSFPVRS WHRASRKSLD PYTSPASLPD EANERFGSGI VRDTFDERDV PHKKRHCRGT  60
SETGRGRSEQ LNLYACIVCE ISDRRVSRCS GIDCLLSFHG ECLNSKSGSS EDLANAYCPY  120
CWFKILVLKH ISAREKVVGA EKAVFKYLDK EIDSRNEVKE SVPRSQEDTN LYGDENGNQD  180
HSVDSSDKSR EADMPLIEDT SYQPEEDTEK FEVNTDKSED MKEDKVIDKV EASGAEDIEK  240
FQDAEDDETA KDQTKVNTES FSGKEHDQVQ QNEKRGRRRR RLLLNDMDSE ISSNESTNER  300
NGEDVTEQIT SSAQVVTSPS GKMKNQQRKL IGTTRVAKSK PVRDISFFKS DQRRRLFWTS  360
EEEEMLKVGV EKFSAEANKN MPWRKILEMG EKVFHETRTP ADLKDKWRNM TGGRLGKQMN
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g18670
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006287565.21e-154uncharacterized protein LOC17882878
TrEMBLA0A1J3FBN31e-176A0A1J3FBN3_NOCCA; Uncharacterized protein (Fragment)
STRINGBostr.2128s0072.1.p1e-172(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76601327
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.21e-06MYB_related family protein