PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g20100
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family WRKY
Protein Properties Length: 344aa    MW: 38261.7 Da    PI: 10.1046
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g20100genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.7e-31277334359
                -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ ++++++++tYegeHnh+
  Tp2g20100 277 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDETSMLIVTYEGEHNHS 334
                9*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.4E-15236273IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.2E-33263334IPR003657WRKY domain
PROSITE profilePS5081129.471270336IPR003657WRKY domain
SuperFamilySSF1182901.7E-26273334IPR003657WRKY domain
SMARTSM007745.5E-37275335IPR003657WRKY domain
PfamPF031061.9E-26277333IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MEEVEAANKA AVESCHGVLN LLSQQTNDHK SILVETTEAV SKFRRVASLL SRGLGQRKIR  60
KLNNNYYNFR SPLMPQHIFL ESPICSQNAI SGCIPILAPK PLQIVPPAAA SYGDIDPKQR  120
PGHPPLMMLN QKMCVDKSFL ELKPPSFRPV DQKPYQFIRH HQQGVYPRSN SGLNLKFDGS  180
GGGSCYSPSV SNGSRSFVSS LSMDASVTDY DRNSFHLIGL PQGSDHISQH SRRTSCSGSL  240
KCGSRSKCHC SKKRKLRVKR SIKVPAISNK IADIPPDEYS WRKYGQKPIK GSPHPRGYYK  300
CSSVRGCPAR KHVERCVDET SMLIVTYEGE HNHSRILSSQ SAQT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-20268333771WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g20100
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300530.0KF430053.1 Brassica rapa WRKY transcription factor 39 (WRKY39) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006395026.10.0probable WRKY transcription factor 74
RefseqXP_024007112.10.0probable WRKY transcription factor 74
SwissprotQ93WU60.0WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBLV4KQP30.0V4KQP3_EUTSA; Uncharacterized protein
STRINGXP_006395026.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38852359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.10.0WRKY DNA-binding protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]