PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g20210
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family Trihelix
Protein Properties Length: 624aa    MW: 71767.7 Da    PI: 7.1045
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g20210genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix49.98.3e-1697162272
   trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 
                W+ +evlaL+++r+ +e+++ +       We+ s+k++e gf+rsp++Ckek+e+ ++ry + +++ ++++
  Tp2g20210  97 WCSDEVLALLRFRSTVENWFPEF-----TWEHTSRKLAEVGFKRSPQECKEKFEEEERRYFNSNNNTNDHH 162
                ********************998.....9*******************************99999888874 PP
2trihelix99.13.8e-31455549186
   trihelix   1 rWtkqevlaLiearr..........emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                rW+++evlaLi++rr           ++  + +++++ plWe++skkm e+g++rs+k+Ckekwen+nk+++k+k+  kkr + +s+tcpyf+ql+
  Tp2g20210 455 RWPRDEVLALINIRRsissmndddlHKDGISLSSSKAVPLWERISKKMLETGYKRSAKRCKEKWENINKYFRKTKDVHKKR-PLDSRTCPYFHQLT 549
                8**************5555433322112222234699*******************************************8.9***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.4E-1195161No hitNo description
PROSITE profilePS500905.48296148IPR017877Myb-like domain
PfamPF138372.1E-19454550No hitNo description
CDDcd122032.11E-25454529No hitNo description
PROSITE profilePS500906.922455522IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MFNGGVPEQI HRFIASPQPP PPLPPHQPAT ERSLPFPVSF ASFNSNQQAQ HMLSLDNRKI  60
IHHHHHHDIK EGGATSEWMG HTDHDSDTPR HHHHHPWCSD EVLALLRFRS TVENWFPEFT  120
WEHTSRKLAE VGFKRSPQEC KEKFEEEERR YFNSNNNTND HHMSNYNNKG NYRIYSEVEE  180
FYHHGHDDDE HVVSSEVGDN QNKRNDSLEG KGNAEETGQD LLEEGKSDHQ DQGQVEESSM  240
GNNINSNTDN VGKVGNVEDG SKSSSSSSLR DKKKRKRKKK KERFGVLKGF CEGLVRNMIA  300
QQEEMHKKLL EDMVKKEEEK MVREEAWKKQ EMDRLNKEVE IRAHEHAMAS DRNTNIIEFI  360
SKFTDNDNHD DGNYKLQSPS PSQDSSSLLL PKPQGNMKFH TSSSLLPQTL TPHNPLHSLQ  420
TNHESVEPIS TKTLKTKTQN PKPPKSDDKS DLGKRWPRDE VLALINIRRS ISSMNDDDLH  480
KDGISLSSSK AVPLWERISK KMLETGYKRS AKRCKEKWEN INKYFRKTKD VHKKRPLDSR  540
TCPYFHQLTA LYSQPSTGTT TTVTDTSAGE LETRPEENRV GSGDPDIPAV MHVDADGAGE  600
KKQFNTIYIY ITSIISFFLL FFRL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1272277KKRKRK
2272279KKRKRKKK
3272280KKRKRKKKK
4273281KRKRKKKKE
5274278RKRKK
6274280RKRKKKK
7274281RKRKKKKE
8276281RKKKKE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g20210
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013677968.10.0trihelix transcription factor GTL2
SwissprotQ8H1810.0GTL2_ARATH; Trihelix transcription factor GTL2
TrEMBLA0A078IRA50.0A0A078IRA5_BRANA; BnaC07g49430D protein
STRINGBo2g152980.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82682838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.10.0Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]