PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp2g20280

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

GeBP

Protein Properties

Length: 452aa MW: 48877.2 Da PI: 4.6045

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp2g20280	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	118.9	2.7e-37	136	234	2	98
DUF573 2 lfqrlwseeDeivlLqGlidf.kaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 lfqrlw++eDei lL+G++d+ ++++g+s++ d+ fye++k++++++++k+qlveK+rrLKkK+++ ++k++sgke+ f+++hdq +f++s+kiW++ Tp2g20280 136 LFQRLWTDEDEIELLRGFLDYiTSHRGSSSHPpDTAPFYEQIKSKLQLDFNKNQLVEKLRRLKKKYRNVMSKISSGKEVFFKSPHDQATFDISRKIWNQ 234 79*****************999999999***************************************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	3.1E-34	137	233	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence Send to blast
MASDERDAVF SVESPELEED GSAGGGGGGG GGGGGETDSD EDLQENEDVV IPEPNEADDD 60 DPEYEDLNSP SMVSAVSTAP LVSATANSSS TGTVTVALPA GSAVPVAAIP VDSDPKWHRT 120 TEIVHLRPPI DDSRRLFQRL WTDEDEIELL RGFLDYITSH RGSSSHPPDT APFYEQIKSK 180 LQLDFNKNQL VEKLRRLKKK YRNVMSKISS GKEVFFKSPH DQATFDISRK IWNQTGKIIG 240 FEDNNVMDFE EANNHHHVNN TNGSSTFNVS IANSNVDIDS ENGLEKKVTM SSISGSRKRS 300 RSRIGKIDED KPIAPCDGPM PNAATNVNLN ENVAAIGDFG EGRNLGGLIE ETVRNCVSPM 360 IKEMMNGTTG MMMAAVGGFP GGGAHAMGVL SPMLMPSVNL GFGGGGGGKG VRDERWRRQQ 420 ILELEVYSRR LDLVQEQIRA TVNELKTMPN GG

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence Send to blast

MASDERDAVF SVESPELEED GSAGGGGGGG GGGGGETDSD EDLQENEDVV IPEPNEADDD  60
DPEYEDLNSP SMVSAVSTAP LVSATANSSS TGTVTVALPA GSAVPVAAIP VDSDPKWHRT  120
TEIVHLRPPI DDSRRLFQRL WTDEDEIELL RGFLDYITSH RGSSSHPPDT APFYEQIKSK  180
LQLDFNKNQL VEKLRRLKKK YRNVMSKISS GKEVFFKSPH DQATFDISRK IWNQTGKIIG  240
FEDNNVMDFE EANNHHHVNN TNGSSTFNVS IANSNVDIDS ENGLEKKVTM SSISGSRKRS  300
RSRIGKIDED KPIAPCDGPM PNAATNVNLN ENVAAIGDFG EGRNLGGLIE ETVRNCVSPM  360
IKEMMNGTTG MMMAAVGGFP GGGAHAMGVL SPMLMPSVNL GFGGGGGGKG VRDERWRRQQ  420
ILELEVYSRR LDLVQEQIRA TVNELKTMPN GG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	297	302	KRSRSR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp2g20280

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006395005.1	0.0	probable transcription factor At5g28040
Swissprot	F4K5T4	0.0	STKLU_ARATH; Probable transcription factor At5g28040
TrEMBL	V4MLG9	0.0	V4MLG9_EUTSA; Uncharacterized protein
STRING	XP_006395005.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3098	27	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	0.0	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes. Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586 [PMID:29264953]