PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g22650
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bZIP
Protein Properties Length: 292aa    MW: 31961.3 Da    PI: 5.6499
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g22650genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_151.32.5e-16136186454
                XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                 kr rr+ +NRe+A+rsR+RK++ ++ Le  v++L++eN++L k+l   ++
  Tp2g22650 136 QKRIRRMHSNRESAKRSRKRKQEHLAGLESQVDSLKGENSTLYKQLIDATQ 186
                59****************************************988765555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.4E-14133197IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.737135181IPR004827Basic-leucine zipper domain
PfamPF001705.0E-14136181IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.6E-13137187No hitNo description
SuperFamilySSF579592.25E-12137186No hitNo description
CDDcd147024.65E-19138189No hitNo description
PROSITE patternPS000360140155IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MDGYTAKDIG MKTSASELAL QEYLTKVLSS STLPRQESIL DTSPLDPSFD FMNRDYTCEL  60
RDSLLLSESL IPAGLFLDAQ SSICENLSAD SPVSANKPEV RGAARRTASG SSEHSDEEDA  120
ETEAGQSEMT NDPNNQKRIR RMHSNRESAK RSRKRKQEHL AGLESQVDSL KGENSTLYKQ  180
LIDATQQFRS AGTNNRVLKS DVETLRVKVK LAEDLVARGS LTSNLNQLLQ THLSPPPQSI  240
NSLHYPRNTS PAITVHSDQS LFPGNTLSGQ NSSPGLGNVS SEAVSCISDI WH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149156KRSRKRKQ
2151156SRKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g22650
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by glucose. {ECO:0000269|PubMed:18841482}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3102230.0AF310223.1 Arabidopsis thaliana bZIP protein BZO2H2 mRNA, complete cds.
GenBankAK2268730.0AK226873.1 Arabidopsis thaliana mRNA for bZIP protein BZO2H2, clone: RAFL09-07-B02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013700428.11e-173basic leucine zipper 9-like
SwissprotQ9FUD31e-170BZIP9_ARATH; Basic leucine zipper 9
TrEMBLA0A1J3FKF51e-179A0A1J3FKF5_NOCCA; Basic leucine zipper 9
STRINGBo2g159200.11e-173(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63702641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.11e-167basic leucine zipper 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ortiz-Espín A, et al.
    Mitochondrial AtTrxo1 is transcriptionally regulated by AtbZIP9 and AtAZF2 and affects seed germination under saline conditions.
    J. Exp. Bot., 2017. 68(5): p. 1025-1038
    [PMID:28184497]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  4. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]