PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp2g23870

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

TCP

Protein Properties

Length: 257aa MW: 27383.5 Da PI: 10.1499

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp2g23870	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	125.8	4.5e-39	35	221	2	121
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............ 88 a+kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ + s +s+ +s+ Tp2g23870 35 AVKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStA-SVSIRGSSTTNSTsstctlsssldh 133 789*************************************************************9999977742.2222222222222356777777888 PP TCP 89 ......................................................kaaksaa.kskksqksaasalnlakesrakarar 121 + a++++ ++++q+++a+al l+++++++a + Tp2g23870 134 kpllgsspfilgkrvradedsgggkdetmgsfatpagfwavparpdfgqvwsfaAGAPQEMfLQQQQQQQPAAALFLHQQQQQQAAMG 221 8889999999999999999999999999999999999999999999999999995556666689999999998999999777776654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.892	41	95	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	4.4E-34	41	197	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MSNNTDGVMI SNGAIIERQR QQQQQQQQSS DGALAVKKPP AKDRHSKVDG RGRRIRMPII 60 CAARVFQLTR ELGHKSDGQT IEWLLRQAEP SIIAATGTGT TPASFSTASV SIRGSSTTNS 120 TSSTCTLSSS LDHKPLLGSS PFILGKRVRA DEDSGGGKDE TMGSFATPAG FWAVPARPDF 180 GQVWSFAAGA PQEMFLQQQQ QQQPAAALFL HQQQQQQAAM GEASAARVGN YLPGHLNLLA 240 SLSGGAPGSG RRDDDPR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp2g23870

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024007014.1	1e-142	transcription factor TCP7
Refseq	XP_024007015.1	1e-142	transcription factor TCP7
Refseq	XP_024007016.1	1e-142	transcription factor TCP7
Refseq	XP_024007017.1	1e-142	transcription factor TCP7
Swissprot	Q9FMX2	1e-119	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A1J3E1H4	1e-161	A0A1J3E1H4_NOCCA; Transcription factor TCP7 (Fragment)
STRING	XP_006394596.1	1e-141	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1782	26	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	2e-68	TCP family protein