PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g24800
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 201aa    MW: 22584.2 Da    PI: 5.4357
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g24800genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.33.5e-17106156255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr+++ +g+++AeIrdp +  k  r++lg+f +  +Aa+a++ a+ kl+g
  Tp2g24800 106 HYRGVRRRP-WGKFAAEIRDPAK--KGSRIWLGTFESDIDAARAYDYAAFKLRG 156
                7********.**********954..34*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-30105165IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-22106165IPR016177DNA-binding domain
PROSITE profilePS5103224.605106164IPR001471AP2/ERF domain
PfamPF008478.2E-12106156IPR001471AP2/ERF domain
CDDcd000189.38E-19106164No hitNo description
SMARTSM003809.6E-35106170IPR001471AP2/ERF domain
PRINTSPR003673.5E-13107118IPR001471AP2/ERF domain
PRINTSPR003673.5E-13146166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1904277Biological Processnegative regulation of wax biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MATFEESSGL EVIQKHLFED LMIPDGFMED FVFDDAAFVS GLWSLEPLNA VPKLEPTSPA  60
LDPDSYVREF PQMEGESSSS STTTTSLEVE IVSNRKRPKS FEETRHYRGV RRRPWGKFAA  120
EIRDPAKKGS RIWLGTFESD IDAARAYDYA AFKLRGRKAV LNFPLDAGKY DAPVNSCRKR  180
RRSDVIEPQG TTTSNSSSSS N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-28103165264ATERF1
3gcc_A2e-28103165264ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177181RKRRR
2177182RKRRRS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g24800
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529230.0AK352923.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-08-P23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009136497.11e-113PREDICTED: ethylene-responsive transcription factor ERF107
SwissprotQ9FKG21e-107EF107_ARATH; Ethylene-responsive transcription factor ERF107
TrEMBLA0A398A9W01e-112A0A398A9W0_BRACM; Uncharacterized protein
STRINGBra012939.1-P1e-112(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32292766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61590.11e-105ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Suh MC,Go YS
    DEWAX-mediated transcriptional repression of cuticular wax biosynthesis in Arabidopsis thaliana.
    Plant Signal Behav, 2014. 9(8): p. e29463
    [PMID:25763625]
  4. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]
  5. Walper E,Weiste C,Mueller MJ,Hamberg M,Dröge-Laser W
    Screen Identifying Arabidopsis Transcription Factors Involved in the Response to 9-Lipoxygenase-Derived Oxylipins.
    PLoS ONE, 2016. 11(4): p. e0153216
    [PMID:27073862]
  6. Ju S,Go YS,Choi HJ,Park JM,Suh MC
    DEWAX Transcription Factor Is Involved in Resistance to Botrytis cinerea in Arabidopsis thaliana and Camelina sativa.
    Front Plant Sci, 2017. 8: p. 1210
    [PMID:28744297]
  7. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]