PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g24830
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB_related
Protein Properties Length: 318aa    MW: 34744.4 Da    PI: 10.207
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g24830genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.73.7e-15104149247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++WT+eE+ +++ + k+lG+g+W+ Ia+ + ++Rt+ q+ s+ qky
        Tp2g24830 104 KPWTEEEHRIFLAGLKKLGKGDWRGIAKSFVTTRTPTQVASHAQKY 149
                      58*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.532821IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129418.92898154IPR017930Myb domain
SuperFamilySSF466895.94E-17100154IPR009057Homeodomain-like
TIGRFAMsTIGR015575.9E-17101152IPR006447Myb domain, plants
SMARTSM007172.3E-12102152IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-12102148IPR009057Homeodomain-like
PfamPF002491.5E-12104149IPR001005SANT/Myb domain
CDDcd001679.61E-11105150No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MVATAKTCSH CGHSGHNSRT CLNGVNKGSV KLFGINISSD PITPPEVTAL RKSLSLGNLD  60
SLLAADNSNG NGDPIAAVED TGYHSDGQIH SKNGRSAHDK KKGKPWTEEE HRIFLAGLKK  120
LGKGDWRGIA KSFVTTRTPT QVASHAQKYF LRLNANDRRK KRASLFDISL EDQKEKQRKS  180
QLMMTGASTS SSKTPSKQPI TGSQEPVQVQ TQAGISNRFQ NLSMEYMPIY PTVPSYYKFP  240
AVMFHPMHYA NPESIRFVHP SGIPVPSHIP IGMPQPQANE ASHMTKKDRL ELDIGLPPPP  300
PQSTGATDLT AHGVIHVK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00573DAPTransfer from AT5G61620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g24830
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0122392e-81AB012239.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K11J9.
GenBankCP0026882e-81CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006394486.10.0probable transcription factor At5g61620
SwissprotQ9FKF91e-178M5162_ARATH; Probable transcription factor At5g61620
TrEMBLV4KP910.0V4KP91_EUTSA; Uncharacterized protein
STRINGXP_006394486.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60212747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.11e-173MYB_related family protein
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]