PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g27610
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family NAC
Protein Properties Length: 188aa    MW: 21670 Da    PI: 4.6928
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g27610genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM111.21.2e-3431181128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                lppGfrF Ptdeelvv++L++k++  +++  +vi+++d+y ++PwdLp k+ +e ++wyf+s+r +        +r+t++gyW++ g d++++++ ++++
  Tp2g27610   3 LPPGFRFFPTDEELVVHFLHRKASLLPCHP-DVIPDLDLYPYDPWDLPGKALGEGRQWYFYSRRTQ--------ERVTSNGYWRSMGIDEPIFTSsTHKK 93 
                79*************************999.99***************87778899******9855........799***************99867888 PP

        NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                vg+kk L+fy g++    +t+Wvm+ey+l
  Tp2g27610  94 VGIKKYLTFYLGDS----QTNWVMQEYSL 118
                **********7654....68*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-441156IPR003441NAC domain
PROSITE profilePS5100542.573156IPR003441NAC domain
PfamPF023651.5E-224118IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MNLPPGFRFF PTDEELVVHF LHRKASLLPC HPDVIPDLDL YPYDPWDLPG KALGEGRQWY  60
FYSRRTQERV TSNGYWRSMG IDEPIFTSST HKKVGIKKYL TFYLGDSQTN WVMQEYSLPD  120
SSSSSSRSSK RSSRGSSSSS HKPDYSKWVI CRVYEQNCSE EEDDDGTELS CLDEVFLSLD  180
DLDEVSLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-36116218174NAC domain-containing protein 19
3swm_B3e-36116218174NAC domain-containing protein 19
3swm_C3e-36116218174NAC domain-containing protein 19
3swm_D3e-36116218174NAC domain-containing protein 19
3swp_A3e-36116218174NAC domain-containing protein 19
3swp_B3e-36116218174NAC domain-containing protein 19
3swp_C3e-36116218174NAC domain-containing protein 19
3swp_D3e-36116218174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g27610
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1187830.0AK118783.1 Arabidopsis thaliana At5g64530 mRNA for unknown protein, complete cds, clone: RAFL21-11-N14.
GenBankBT0257460.0BT025746.1 Arabidopsis thaliana At5g64530 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619013.11e-120PREDICTED: NAC transcription factor 25-like
SwissprotQ8GWK61e-118NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A078H0M41e-118A0A078H0M4_BRANA; BnaA02g34250D protein
TrEMBLA0A398ANP31e-118A0A398ANP3_BRACM; Uncharacterized protein
STRINGBostr.0568s0345.1.p1e-118(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36742862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.11e-101xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]