PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp2g28160

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

bHLH

Protein Properties

Length: 360aa MW: 40159.1 Da PI: 6.1298

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp2g28160	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.5	6.5e-05	241	284	8	55
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er R +ri + + L +llP+ + + s +iL v+++k Lq Tp2g28160 241 TERERKQRIDDNIKALAKLLPHE---TEEETS-ESILNDIVDHVKLLQ 284 69********************9...656555.789999999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	4.7E-7	232	293	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-7	232	293	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MDFNSVFQSL TELFPQIDAK MLRTVAMEHP TDADEAAAVV ISEVVPLFPQ NLVDKTRPRN 60 KESENLPDCK VERDMQDGDG SLSLSQWLHP SKFPQSYLAL LSEESTPDEK PPPDYVVKKM 120 VLPSRDAAAG AREGIRTIYS ASENGGINSS KTASSMVKPS VRVQSRTNNE PSGSSSKVPV 180 AGRSSSKSTH PWTQNYSEKL RSWKKRSNND KPDFSQLYGQ SKEAPSKSKQ SNKNKNKCYT 240 TERERKQRID DNIKALAKLL PHETEEETSE SILNDIVDHV KLLQLQMKEL SRSRLGGEPI 300 SHAMTFVEGY GHYIHQDETM TKPLEEIMGD LLENDSDAAV SLLESKGLYL MPLSSVQGLC

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MDFNSVFQSL TELFPQIDAK MLRTVAMEHP TDADEAAAVV ISEVVPLFPQ NLVDKTRPRN  60
KESENLPDCK VERDMQDGDG SLSLSQWLHP SKFPQSYLAL LSEESTPDEK PPPDYVVKKM  120
VLPSRDAAAG AREGIRTIYS ASENGGINSS KTASSMVKPS VRVQSRTNNE PSGSSSKVPV  180
AGRSSSKSTH PWTQNYSEKL RSWKKRSNND KPDFSQLYGQ SKEAPSKSKQ SNKNKNKCYT  240
TERERKQRID DNIKALAKLL PHETEEETSE SILNDIVDHV KLLQLQMKEL SRSRLGGEPI  300
SHAMTFVEGY GHYIHQDETM TKPLEEIMGD LLENDSDAAV SLLESKGLYL MPLSSVQGLC

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp2g28160

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK118145	1e-108	AK118145.1 Arabidopsis thaliana At5g64980 mRNA for unknown protein, complete cds, clone: RAFL19-44-P05.
GenBank	BT029204	1e-108	BT029204.1 Arabidopsis thaliana At5g64980 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013693817.1	1e-174	uncharacterized protein LOC106397743 isoform X1
TrEMBL	A0A0D3BEW2	1e-172	A0A0D3BEW2_BRAOL; Uncharacterized protein
STRING	Bo3g100520.1	1e-173	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12956	16	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30980.1	3e-15	LJRHL1-like 2