PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g28680
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family Dof
Protein Properties Length: 311aa    MW: 34581.3 Da    PI: 8.2789
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g28680genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.85.7e-393392261
     zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                +++lkcprC+s+ntkfCyynnyslsqPr+fCk+CrryWt+GGalrnvP+Ggg+rk kks
  Tp2g28680 33 DQQTLKCPRCNSSNTKFCYYNNYSLSQPRHFCKSCRRYWTRGGALRNVPIGGGCRKTKKS 92
               57899****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-332191IPR003851Zinc finger, Dof-type
PfamPF027013.9E-333591IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.5533791IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103975IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010052Biological Processguard cell differentiation
GO:0010118Biological Processstomatal movement
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1902066Biological Processregulation of cell wall pectin metabolic process
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MSSHTNLHSP KPDHRISGTP HTKKPPSSSG SQDQQTLKCP RCNSSNTKFC YYNNYSLSQP  60
RHFCKSCRRY WTRGGALRNV PIGGGCRKTK KSIKPNTITP SSSSSQRFFS SIMEDSSKFF  120
PPPTTMDFQL AGLSLNKIND LQLLNNQEVL GLRPMEQVET TAPVDVGSGL SLMGFGDYNN  180
TNNISPATFS TTGATDGNLA TSIETLSCLN QDLHWRLQQQ RMAMLFGNSK EETVVVERPQ  240
PILYRNLEIV NSSPSPMKKG DNQTEWYFGN NNDNEGVTNN NDNNNNNTGG SDQWSNGLEA  300
WTDLNHYNAL P
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g28680
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022543303.10.0dof zinc finger protein DOF5.7-like
SwissprotQ9LSL61e-175DOF57_ARATH; Dof zinc finger protein DOF5.7
TrEMBLA0A397Z0F60.0A0A397Z0F6_BRACM; Uncharacterized protein
STRINGBo3g097960.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49502850
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65590.11e-165Dof family protein
Publications ? help Back to Top
  1. Castorina G,Fox S,Tonelli C,Galbiati M,Conti L
    A novel role for STOMATAL CARPENTER 1 in stomata patterning.
    BMC Plant Biol., 2016. 16(1): p. 172
    [PMID:27484174]