PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g29230
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family LBD
Protein Properties Length: 255aa    MW: 27598 Da    PI: 7.6839
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g29230genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260101.29.5e-322103197
     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                +C++C+vlr++C+++C+l+p++     +++q +++ +v+k+FG++ ++++++a+pe++r+++++sl+yeA+ r+ +Pv+Ga+g++++++++++q+++e++
  Tp2g29230   2 SCNGCRVLRKGCSENCILRPCIqwmetADAQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLYEACGRTVNPVNGAIGMLWTGNWNICQAAVETV 101
                6*********************9998666789****************************************************************9998 PP

     DUF260  96 ll 97 
                l+
  Tp2g29230 102 LR 103
                76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.7131107IPR004883Lateral organ boundaries, LOB
PfamPF031951.8E-262101IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006807Biological Processnitrogen compound metabolic process
GO:0060776Biological Processsimple leaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSENCILR PCIQWMETAD AQGHATVFVA KFFGRAGLMS FISAVPESQR  60
PALFQSLLYE ACGRTVNPVN GAIGMLWTGN WNICQAAVET VLRGGSLRPI PELLTHGGGF  120
AGFPSATSEE ASEICTEMLN LQQNDSSDRN VYHHSRFSSS RSRSTLDSSP TKRRRLASSE  180
QQPSSELDLS LIPTFPIKTT PSSTRRRSGT LSMNSEESVT TTTTTTTSFW DNTATGGDLC  240
GNGGGETSKL LHLFV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171175KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g29230
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738720.0AB473872.1 Arabidopsis thaliana ASL39 mRNA for ASYMMETRIC LEAVES2-like 39 protein, complete cds.
GenBankAF4478940.0AF447894.1 Arabidopsis thaliana LOB DOMAIN 37 (LBD37) mRNA, complete cds.
GenBankBT0244770.0BT024477.1 Arabidopsis thaliana At5g67420 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009103421.11e-157PREDICTED: LOB domain-containing protein 37-like
SwissprotQ9FN111e-144LBD37_ARATH; LOB domain-containing protein 37
TrEMBLA0A291LR191e-155A0A291LR19_BRARR; Transcription factor LBD37b
TrEMBLA0A397YK281e-155A0A397YK28_BRACM; Uncharacterized protein
TrEMBLM4D6Q41e-155M4D6Q4_BRARP; Uncharacterized protein
STRINGBra012164.1-P1e-156(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.11e-136LOB domain-containing protein 37
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]