PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp2g29670

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

Nin-like

Protein Properties

Length: 258aa MW: 30020.3 Da PI: 9.6749

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp2g29670	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	81.6	7.7e-26	133	182	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k++s + ++ yF++pi++AAkeL+++lT+LK++CR++GI+RWPhRk++s+ Tp2g29670 133 KTLSRQAIKPYFYMPITKAAKELNIGLTLLKKRCRELGIPRWPHRKLTSI 182 8999*******************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.905	118	202	IPR003035	RWP-RK domain
Pfam	PF02042	2.4E-21	135	182	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MADRKPLRSW SESDDYESFL LEENFFSLLD QSLSIGYNID VKPFSTRFPV DDHMFMASVD 60 LEAISTFSQD VLSGPWNENI GNYSNHVEPI IDEISRTNCM GNPNMEMILH QSNYRMKERT 120 SHRRNDRENR VIKTLSRQAI KPYFYMPITK AAKELNIGLT LLKKRCRELG IPRWPHRKLT 180 SIQGIITNLK DHLGKTEGET NRSKLRNALE ILEMEKKMIE ESPGLEFGDK TKRLRQACFK 240 ANYKRRRLLS ISNTASVS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	243	247	KRRRL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp2g29670

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB026640	2e-43	AB026640.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K8A10.
GenBank	CP002688	2e-43	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013594762.1	1e-121	PREDICTED: protein RKD3-like
Refseq	XP_013689678.1	1e-121	protein RKD3-like
Swissprot	Q9FGD1	1e-105	RKD3_ARATH; Protein RKD3
TrEMBL	A0A0D3D8A1	1e-119	A0A0D3D8A1_BRAOL; Uncharacterized protein
STRING	Bo7g064180.1	1e-120	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12180	19	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	2e-88	RWP-RK domain-containing protein

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]