PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp2g29790

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

LBD

Protein Properties

Length: 317aa MW: 35177.2 Da PI: 7.021

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp2g29790	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136.9	7.5e-43	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrrkC+++Cv+apyfp +qp+kfa+vhk+FGasnv kll++l ++reda++sl+yeAear+rdPvyG+vg+i+ lq++l+ql+ +l+ +k+e Tp2g29790 7 PCAACKFLRRKCTQECVFAPYFPPDQPAKFAYVHKVFGASNVAKLLNELVSNQREDAVNSLFYEAEARLRDPVYGCVGLISILQHRLKQLQRDLEDAKKE 106 7*********************************************************************************************999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038155	2.0E-98	4	311	IPR017414	LOB domain-containing protein 10/36/41
PROSITE profile	PS50891	26.757	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-42	7	104	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009954	Biological Process	proximal/distal pattern formation
GO:0009965	Biological Process	leaf morphogenesis
GO:0048441	Biological Process	petal development

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MASSSSPCAA CKFLRRKCTQ ECVFAPYFPP DQPAKFAYVH KVFGASNVAK LLNELVSNQR 60 EDAVNSLFYE AEARLRDPVY GCVGLISILQ HRLKQLQRDL EDAKKELATY AGPQAMLPIL 120 QTQHHPQPHF MSLPPQPQRP SSSSSASVLT HHHHHNLLPM MAIPTGQLYH QQQQQIFEAQ 180 QLAAVAREQQ NEMFRAYGAG GSNSQVEILR FDNGFDSVPT GSVTVTGFNQ LTSGGTNVTG 240 MSPSLALGGN FVDSPPTNDN YHTDQQLHQH QHHQHHEAQL FIPTQSSQPL PLQTQETQTQ 300 PNSDSEEGRR NIIGSSR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-48	3	111	7	115	LOB family transfactor Ramosa2.1
5ly0_B	1e-48	3	111	7	115	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp2g29790

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK228533	1e-109	AK228533.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL15-23-B20.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013653566.1	0.0	LOB domain-containing protein 36-like
Refseq	XP_013653567.1	0.0	LOB domain-containing protein 36-like
Refseq	XP_013653569.1	0.0	LOB domain-containing protein 36-like
Refseq	XP_013653570.1	0.0	LOB domain-containing protein 36-like
Swissprot	Q9FKZ3	1e-163	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A3P6AVY7	0.0	A0A3P6AVY7_BRACM; Uncharacterized protein
STRING	Bra012112.1-P	1e-180	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8008	24	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	1e-134	ASYMMETRIC LEAVES 2-like 1

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]