PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g00520
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB
Protein Properties Length: 202aa    MW: 23280.4 Da    PI: 10.3599
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g00520genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding521.7e-162572148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++l  ++  +G g W+t+a+  g++Rt+k+c++rw++yl
        Tp3g00520 25 KGPWTMEEDLILFSYILNHGEGLWNTVAKASGLKRTGKSCRLRWLNYL 72
                     79********************************************97 PP
2Myb_DNA-binding55.21.7e-1778121146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ ++eE++l+++++++lG++ W++Ia++++ gRt++++k++w++
        Tp3g00520  78 RGNISAEEQLLIIQLHAKLGNR-WSKIAKHLP-GRTDNEIKNFWRT 121
                      7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.5932072IPR017930Myb domain
SuperFamilySSF466894.87E-2923119IPR009057Homeodomain-like
SMARTSM007177.4E-122474IPR001005SANT/Myb domain
PfamPF002491.2E-142572IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-212679IPR009057Homeodomain-like
CDDcd001673.84E-82772No hitNo description
PROSITE profilePS5129424.79273127IPR017930Myb domain
SMARTSM007174.3E-1677125IPR001005SANT/Myb domain
PfamPF002494.4E-1678121IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-2480127IPR009057Homeodomain-like
CDDcd001674.03E-1282121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0080086Biological Processstamen filament development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MKKTGRGKQR ITSHSQKEEE GTVRKGPWTM EEDLILFSYI LNHGEGLWNT VAKASGLKRT  60
GKSCRLRWLN YLRPDVRRGN ISAEEQLLII QLHAKLGNRW SKIAKHLPGR TDNEIKNFWR  120
TKIQRHIKLS SSSSSSENMN IRQSPVMTTT DQGSSSKAFD MAESFISPTP FHVMEQSNDS  180
YWNVEDLWPV HLLNGDHQHQ LI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-262512727128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting redundantly with MYB21 and MYB24 to control stamen filament elongation in the late developed flowers. Repressed at the transcript levels by DELLA proteins. {ECO:0000269|PubMed:19325888}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00324DAPTransfer from AT3G01530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g00520
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1180911e-154AK118091.1 Arabidopsis thaliana At3g01530 mRNA for putative transcription factor, complete cds, clone: RAFL19-34-G03.
GenBankAY0887611e-154AY088761.1 Arabidopsis thaliana clone 94595 mRNA, complete sequence.
GenBankAY5195821e-154AY519582.1 Arabidopsis thaliana MYB transcription factor (At3g01530) mRNA, complete cds.
GenBankBT0055741e-154BT005574.1 Arabidopsis thaliana clone U50886 putative myb family transcription factor (At3g01530) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013585517.11e-115PREDICTED: transcription factor MYB57-like
SwissprotQ9SSA11e-105MYB57_ARATH; Transcription factor MYB57
TrEMBLA0A078IJ111e-114A0A078IJ11_BRANA; BnaC05g48910D protein
STRINGBo5g155050.11e-113(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01530.11e-106myb domain protein 57