PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g00600
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family HD-ZIP
Protein Properties Length: 218aa    MW: 24710.4 Da    PI: 5.1754
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g00600genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.13e-1819621356
               HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox 13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
               + Le+ Fe ++++  e++++LAkklgL+ rqV vWFqNrRa++k
  Tp3g00600 19 HLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWK 62
               67*****************************************9 PP
2HD-ZIP_I/II120.77.3e-39181001193
  HD-ZIP_I/II  11 vklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  v+lLE+sFe+e+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+d++ Lk++yd+l ++ +++ ke+++Lr+++++
    Tp3g00600  18 VHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDFDLLKSTYDQLLSNYDSIVKENDKLRSQVTS 100
                  789****************************************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003899.8E-16668IPR001356Homeobox domain
SuperFamilySSF466896.42E-171773IPR009057Homeodomain-like
CDDcd000862.98E-151865No hitNo description
Gene3DG3DSA:1.10.10.605.2E-201871IPR009057Homeodomain-like
PfamPF000462.1E-151962IPR001356Homeobox domain
PROSITE profilePS5007115.6612164IPR001356Homeobox domain
PRINTSPR000312.8E-63544IPR000047Helix-turn-helix motif
PROSITE patternPS0002703962IPR017970Homeobox, conserved site
PRINTSPR000312.8E-64460IPR000047Helix-turn-helix motif
PfamPF021832.8E-1664105IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MAKENGPHQA QKGPLQIVHL LEKSFETENK LEPERKTQLA KKLGLQPRQV AVWFQNRRAR  60
WKTKQLERDF DLLKSTYDQL LSNYDSIVKE NDKLRSQVTS LAEKLRGKDE TANEPPGQVP  120
EANQVDPVNM NRFEPAMKTE DRLSSGSVGS AVLDEDAPQL LDSCDSYFPS IVPIHSEEYN  180
NNKNNGSDND RSCFADVFVP TTSPSHDHGE PLGFWGWT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15664RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g00600
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3528540.0AK352854.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-08-H09.
GenBankAK3535350.0AK353535.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-50-D05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408508.21e-128homeobox-leucine zipper protein HAT5
SwissprotQ022831e-117HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLV4NTB71e-127V4NTB7_EUTSA; Uncharacterized protein
STRINGXP_006408508.11e-128(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88842738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-118homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]