PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g01050
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family WRKY
Protein Properties Length: 462aa    MW: 50331.7 Da    PI: 8.7137
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g01050genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1017.1e-32198254259
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                dDgynWrKYGqK++kg e+prsYY+Ct+ +Cpvkkkvers+ d+++++i+Y+g+H+he
  Tp3g01050 198 DDGYNWRKYGQKPIKGCEYPRSYYKCTHVNCPVKKKVERSS-DGQITQIIYKGQHDHE 254
                8****************************************.***************8 PP
2WRKY105.13.6e-33343401159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+vkg+++prsYY+Ct+a+C+v+k+ver+++d k+v++tYeg+Hnh+
  Tp3g01050 343 LDDGYRWRKYGQKVVKGNPHPRSYYKCTTANCTVRKHVERASTDAKAVITTYEGKHNHD 401
                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-28189256IPR003657WRKY domain
SuperFamilySSF1182902.22E-25195256IPR003657WRKY domain
SMARTSM007743.4E-35197255IPR003657WRKY domain
PROSITE profilePS5081124.03198256IPR003657WRKY domain
PfamPF031061.5E-24198253IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.4E-36328403IPR003657WRKY domain
SuperFamilySSF1182904.18E-29335403IPR003657WRKY domain
PROSITE profilePS5081137.734338403IPR003657WRKY domain
SMARTSM007743.8E-38343402IPR003657WRKY domain
PfamPF031061.6E-25344401IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0031347Biological Processregulation of defense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MALEDDVSSM RTTTLVAPTR PTITVPQRPP AMETTAYFFG GGDGLSLSPG PLSFVSSLFV  60
DHLPDVLTPD NQRTTSFSQL LAGAMSVSPG GGGGRSTAGM FAGGGPMFTI PSGFSPSSLL  120
TSPMFFPPQS QAQTGFVQPQ PQRPDSCPNQ MAPLTSTAVH GRQSFEVSQA DHRTRNHYNN  180
NNSHNRSYNV VNVDKPADDG YNWRKYGQKP IKGCEYPRSY YKCTHVNCPV KKKVERSSDG  240
QITQIIYKGQ HDHERPQNRR GGGGGGRDSG EIGDVRYIGG AGLMMESSDD SGYGKDHDND  300
TDDDDEDLPA SKIRKIDGGV STTHRTVTEP KIIVQTRSEV DLLDDGYRWR KYGQKVVKGN  360
PHPRSYYKCT TANCTVRKHV ERASTDAKAV ITTYEGKHNH DVPAARNGTA AATSATAGSS  420
DHHRMRSMSG NNMQQHMSFG NNTNTGQSPV LLRLKEEKIT TN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-38198404878Probable WRKY transcription factor 4
2lex_A3e-38198404878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g01050
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931380.0KM593138.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY28) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024015484.10.0probable WRKY transcription factor 58 isoform X2
SwissprotQ93WU70.0WRK58_ARATH; Probable WRKY transcription factor 58
TrEMBLV4M4N40.0V4M4N4_EUTSA; Uncharacterized protein
STRINGXP_006408459.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156701416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01080.10.0WRKY DNA-binding protein 58
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]