PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp3g01370

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

MIKC_MADS

Protein Properties

Length: 234aa MW: 26701.3 Da PI: 7.4982

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp3g01370	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	36.8	4.9e-12	19	43	27	51
HHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 27 LSvLCdaevaviifsstgklyeyss 51 LSvLCdaev++i+fs++gklye++s Tp3g01370 19 LSVLCDAEVSLIVFSNRGKLYEFCS 43 9**********************96 PP
2	K-box	93.6	3.3e-31	62	157	4	99
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + +++ +++ e++++e+ kLk ++enLqr+qR+llGedL++L+ keL+qLe+qL+ slk++R K++++l+q+ +lq ke+ l e+n+aL++kle Tp3g01370 62 IEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRCIKTQYMLDQLTDLQGKEHILLEANRALSMKLE 157 56667788999**********************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	5.7E-17	1	44	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	15.629	1	45	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.01E-18	2	64	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.5E-8	17	41	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	1.4E-24	69	156	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	14.462	72	162	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009611	Biological Process	response to wounding
GO:0048481	Biological Process	plant ovule development
GO:0071486	Biological Process	cellular response to high light intensity
GO:0071492	Biological Process	cellular response to UV-A
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MGRGRVELKR IENKINRQLS VLCDAEVSLI VFSNRGKLYE FCSTSNMLKT LERYQKCSYG 60 SIEVNNKPAK ELENSYREYL KLKGRYENLQ RQQRNLLGED LGPLNSKELE QLERQLDGSL 120 KQVRCIKTQY MLDQLTDLQG KEHILLEANR ALSMKLEDMI GVRSHHIGGA WEGGDQHNVA 180 YGHHQAQSQG LFQSLECDPT LQIGYNHPVC SEQMAVTTQG QSQPGNGYIP GWML

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ox0_A	2e-33	59	158	1	103	Developmental protein SEPALLATA 3
4ox0_B	2e-33	59	158	1	103	Developmental protein SEPALLATA 3
4ox0_C	2e-33	59	158	1	103	Developmental protein SEPALLATA 3
4ox0_D	2e-33	59	158	1	103	Developmental protein SEPALLATA 3
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Functions with SEPALLATA1/AGL2 and SEPALLATA3/AGL9 to ensure proper development of petals, stamens and carpels and to prevent the indeterminate growth of the flower meristem. Forms a heterodimer via the K-box domain with AG, that could be involved in genes regulation during floral meristem development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp3g01370

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC967959	0.0	KC967959.1 Brassica oleracea var. viridis SEP2.b (SEP2.b) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006408426.1	1e-167	developmental protein SEPALLATA 2 isoform X1
Swissprot	P29384	1e-161	SEP2_ARATH; Developmental protein SEPALLATA 2
TrEMBL	V4M179	1e-166	V4M179_EUTSA; Uncharacterized protein
STRING	XP_006408426.1	1e-167	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3289	27	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02310.1	1e-163	MIKC_MADS family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Maejima K, et al. Degradation of class E MADS-domain transcription factors in Arabidopsis by a phytoplasmal effector, phyllogen. Plant Signal Behav, 2015. 10(8): p. e1042635 [PMID:26179462] Wang X, et al. An exon skipping in a SEPALLATA-Like gene is associated with perturbed floral and fruits development in cucumber. J Integr Plant Biol, 2016. 58(9): p. 766-71 [PMID:26936301] Li D, et al. FAR-RED ELONGATED HYPOCOTYL3 activates SEPALLATA2 but inhibits CLAVATA3 to regulate meristem determinacy and maintenance in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9375-80 [PMID:27469166]