PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g03070
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family M-type_MADS
Protein Properties Length: 197aa    MW: 22567.9 Da    PI: 7.1312
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g03070genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.53e-171462250
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
               ++e +  r +tfskR+ gi+KK +E+ +LCd+e+a ++fs+ gk y+++
  Tp3g03070 14 KVEAYGDRMITFSKRKYGIFKKMNEIITLCDVEAAFLVFSQAGKPYTFA 62
               56777889****************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.301565IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-20564IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.29E-21681IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-16727IPR002100Transcription factor, MADS-box
PfamPF003191.1E-181661IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-162742IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-164263IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MKHTKGKQKI EMKKVEAYGD RMITFSKRKY GIFKKMNEII TLCDVEAAFL VFSQAGKPYT  60
FAHPSMEEAV GRLKSPWRHE QSARDDANTG PLVEAYKRQR IEDLMKKYVD LVEELEMEKE  120
KEKILKESKS EKKLDKMWWN IPAEGLSVEE LKERHQAFVE LHVSLCGMAL QRLGKDDDGS  180
SSGLAERGHC GGDEAEA
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g03070
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408223.11e-102agamous-like MADS-box protein AGL62
TrEMBLV4NSM71e-101V4NSM7_EUTSA; Uncharacterized protein
STRINGXP_006408223.11e-102(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.11e-67AGAMOUS-like 57