PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g03750
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family GeBP
Protein Properties Length: 452aa    MW: 49375.7 Da    PI: 4.7312
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g03750genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573120.21.1e-37132230298
     DUF573   2 lfqrlwseeDeivlLqGlidf.kaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 
                lfqrlw++eDei lL+G++d+ ++++g s++  d+  fye++k++++++++k+qlveK+rrLKkK+++ ++k++sgke+ f+++hdq++fe+s+kiW++
  Tp3g03750 132 LFQRLWTDEDEIELLRGFLDYiTTHRGNSSHPpDTAPFYEQIKSKLQLDFNKNQLVEKLRRLKKKYRNVMSKISSGKEVFFKSPHDQSTFEISRKIWNQ 230
                79*******************8999**999999****************************************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.7E-34133229IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MTSDHRDAVF SLESPDLEEG GVGDGGESDT DEDLRENDDV VLPEANEAED DDPEEEDLNS  60
PSTSSLAMVS AVSTTAVVSG TATNSSTGAV TVALPAGSAV PVSVIPVDSD PKWHRMTEIV  120
HQRPPIDDSR RLFQRLWTDE DEIELLRGFL DYITTHRGNS SHPPDTAPFY EQIKSKLQLD  180
FNKNQLVEKL RRLKKKYRNV MSKISSGKEV FFKSPHDQST FEISRKIWNQ TGKIIGFEDN  240
NVMDFEETNH YHHGSNTNGN YSTFNSPSSN PTLEMDSENG VEKKLPMSSS SGSRKRSRSR  300
IGKIEEDNKP IITPSDGQIP NAASNVNLNE TASAGIGGNL GGVIEETVKN CLSPVIKEMM  360
NGTTSMMMAA MGGGFPGGGG SGGGGHGFGS FSPMFTRPIG YGVEGGGNKA VMDERWRKQQ  420
ILELEVYSRR LELVQEQIRT TLHELKTMPS GV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1294299KRSRSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g03750
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006297660.10.0probable transcription factor At3g04930
SwissprotQ9CAV70.0STKLJ_ARATH; Probable transcription factor At3g04930
TrEMBLR0I2K60.0R0I2K6_9BRAS; Uncharacterized protein
STRINGCagra.2179s0002.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30982764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.11e-171DNA-binding storekeeper protein-related transcriptional regulator