PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp3g04570

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

NF-YA

Protein Properties

Length: 258aa MW: 27934.4 Da PI: 10.0419

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp3g04570	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	63.6	5.4e-20	123	171	8	53
CBFB_NFYA 8 aKQyqrIlkRRqkRaklee...ekkldeksrkpylheSRhkhAlrRpRg 53 ++Qy++I++RRq+Rak+++ ++kl++++rkpy+h+SRh hAlrRpRg Tp3g04570 123 SRQYHGIIRRRQSRAKAAAvldQNKLSSRCRKPYMHHSRHLHALRRPRG 171 69**************9999************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.6E-15	114	177	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	23.953	115	179	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.8E-11	118	140	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	9.5E-15	124	171	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.8E-11	153	176	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009567	Biological Process	double fertilization forming a zygote and endosperm
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MAMHPVRESL FSAPQISLWN AFGSQSLAPA SLAGDSDSSA GVKVGSAGET EHGVNKQSNS 60 ATHLAFSLGD VKSPRVVSKP HGAAFSMQPP CLELGYTQPP IYTKYPCVEQ QYYGVVSAYG 120 SQSRQYHGII RRRQSRAKAA AVLDQNKLSS RCRKPYMHHS RHLHALRRPR GGTNAKKADG 180 TKQTQFQPQP QQSNSQNSEV LHPESGTMNL SNGLNVSGSE VTSMNYFLSS SVHPLGGIVM 240 PSKWITAAMD NGCCNFKT

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp3g04570

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352991	1e-133	AK352991.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-H06.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020888748.1	1e-155	nuclear transcription factor Y subunit A-2
Refseq	XP_020888749.1	1e-155	nuclear transcription factor Y subunit A-2
Refseq	XP_020888750.1	1e-155	nuclear transcription factor Y subunit A-2
Swissprot	Q9M9X4	1e-155	NFYA2_ARATH; Nuclear transcription factor Y subunit A-2
TrEMBL	D7L4M5	1e-153	D7L4M5_ARALL; Uncharacterized protein
STRING	fgenesh2_kg.3__563__AT3G05690.1	1e-154	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3008	27	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G05690.1	1e-133	nuclear factor Y, subunit A2

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Nasim Z,Fahim M,Ahn JH Possible Role of MADS AFFECTING FLOWERING 3 and B-BOX DOMAIN PROTEIN 19 in Flowering Time Regulation of Arabidopsis Mutants with Defects in Nonsense-Mediated mRNA Decay. Front Plant Sci, 2017. 8: p. 191 [PMID:28261246] Zhang M,Hu X,Zhu M,Xu M,Wang L Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis. Sci Rep, 2017. 7(1): p. 1395 [PMID:28469131]