PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g04750
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family M-type_MADS
Protein Properties Length: 332aa    MW: 37776.7 Da    PI: 9.7205
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g04750genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF542.1e-171050242
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
               +i n+s r+ tf kR++g++KK +ELS+LC+++++ ii+s+
  Tp3g04750 10 FIANNSSRKATFKKRKKGLMKKVNELSTLCGINACAIIYSP 50
               799*************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.128149IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-24160IPR002100Transcription factor, MADS-box
CDDcd002663.39E-22285No hitNo description
SuperFamilySSF554557.72E-25295IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-8323IPR002100Transcription factor, MADS-box
PfamPF003199.8E-181051IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MTRKKVKLAF IANNSSRKAT FKKRKKGLMK KVNELSTLCG INACAIIYSP YDSNPEVWPS  60
NAGVQRVLSD FQALPEMDQQ KKMVDQETFL RQRIAKATDH LKRQRKDNRE LEMTQVMFQC  120
LVGNMGMFHL NILDLNDLGY LIDQYLKDLN RKIEILGNSG MKIGESSNAD ADAAPSERIG  180
SLAVVSATSA PAAAIHEMGS SSYSAATTTF FNSIQRRHHH SHQFRHPTAP HVGFYEQPRN  240
LNLNHNQNQQ QWLMEMMNHP KQMSHAAEQI GFPFMDDNHH NHNHHHHQVH HHQLQQQQQI  300
PMDLSSTAPT ASSSSSITPV MSPNPTNNIW FR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAFIANNSSRKATFKKRK
22125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g04750
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010466902.11e-141PREDICTED: agamous-like MADS-box protein AGL80
RefseqXP_018454705.11e-141PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK31e-125AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A3P6AW001e-137A0A3P6AW00_BRACM; Uncharacterized protein
STRINGXP_010466902.11e-140(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-106AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]