PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp3g05170

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

FAR1

Protein Properties

Length: 764aa MW: 88005.4 Da PI: 8.4323

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp3g05170	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.5	3.3e-21	44	118	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fYn+YA+++GF+vr+ + ++s+++g++ +r+fvCskeg++ + +rtgC a ++v+++++gkw+++++++eHnHel Tp3g05170 44 EFYNSYATRTGFKVRTGQLYRSRTDGTVSSRRFVCSKEGFQLN--------------SRTGCPAFIRVQRRDTGKWVLDQIQKEHNHEL 118 6*************************************876..............589*************************98 PP
2	FAR1	67.6	3.1e-21	204	280	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY++YA+ vGF+vr+ + +sk +g+it+r+fvCskeg+++++ r+gC a +++k++++g w v++l+++HnH+l p Tp3g05170 204 QFYQAYAEVVGFRVRIGQLFRSKVDGSITSRRFVCSKEGFQHPS--------------RMGCGAYMRIKRQDSGGWIVDRLNKDHNHDLEP 280 6*************************************9994..............799*************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.3E-17	44	118	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.0E-16	204	280	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.7E-25	376	468	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.311	650	686	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.5E-8	657	683	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.3E-8	661	688	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 764 aa Download sequence Send to blast
MVVKAYPLGM VRVMNNNGIG EDEGDSGVEP YVGLEFDTAE EAREFYNSYA TRTGFKVRTG 60 QLYRSRTDGT VSSRRFVCSK EGFQLNSRTG CPAFIRVQRR DTGKWVLDQI QKEHNHELGG 120 HMEETTPRPS VQQRAPAPTK LAISVPHRPK MKVVDEADKG RSCPSGVISF KRFKGAEESD 180 GQTQPKATEP YAGLEFGSAN EACQFYQAYA EVVGFRVRIG QLFRSKVDGS ITSRRFVCSK 240 EGFQHPSRMG CGAYMRIKRQ DSGGWIVDRL NKDHNHDLEP GKKNAGMKKI TEDVTGGFDS 300 VDLIELNDFS NHVNKRRENT IGKEWYPVLL DYFQSKQADD MGFFYAVELD SNGSCMSIFW 360 ADSRSRFACS QFGDAIVFDT SYRKGDYSVP FAMFIGFNHH RQPVLLGGAL VADESKEAFS 420 WLFQTWLRAM SGRRPRSIVA DQDLPIQQAV AQIFPGTHHR FSAWQIRSKE RENLRSFPNE 480 FKYEYEKCLY QTQTTVEFDT MWSALVNKYG LRDNMWLREI YDKREKWVPA YLRASFFGGI 540 PVNGTHEAFY GTSLNSLTSL REFISRYEQG LEQRREEERK EDFNSYNLQP FLQTKEPVEE 600 QCRRLYTLTI FRIFQGELAQ SYNYLGLKTY EEGAISRFLV RKCGNENEKH AVTFTASNLN 660 ASCSCQMFEY EGLLCRHILK VFNLLDIREL PSRYILHRWT KNAEFGFVRD VESGVTSQDL 720 KALMIWSLRE AASKYIEFGT SSLEKYKLAY EIMREGGKKL CWQR

Sequence ? help Back to Top

Protein Sequence Length: 764 aa Download sequence Send to blast

MVVKAYPLGM VRVMNNNGIG EDEGDSGVEP YVGLEFDTAE EAREFYNSYA TRTGFKVRTG  60
QLYRSRTDGT VSSRRFVCSK EGFQLNSRTG CPAFIRVQRR DTGKWVLDQI QKEHNHELGG  120
HMEETTPRPS VQQRAPAPTK LAISVPHRPK MKVVDEADKG RSCPSGVISF KRFKGAEESD  180
GQTQPKATEP YAGLEFGSAN EACQFYQAYA EVVGFRVRIG QLFRSKVDGS ITSRRFVCSK  240
EGFQHPSRMG CGAYMRIKRQ DSGGWIVDRL NKDHNHDLEP GKKNAGMKKI TEDVTGGFDS  300
VDLIELNDFS NHVNKRRENT IGKEWYPVLL DYFQSKQADD MGFFYAVELD SNGSCMSIFW  360
ADSRSRFACS QFGDAIVFDT SYRKGDYSVP FAMFIGFNHH RQPVLLGGAL VADESKEAFS  420
WLFQTWLRAM SGRRPRSIVA DQDLPIQQAV AQIFPGTHHR FSAWQIRSKE RENLRSFPNE  480
FKYEYEKCLY QTQTTVEFDT MWSALVNKYG LRDNMWLREI YDKREKWVPA YLRASFFGGI  540
PVNGTHEAFY GTSLNSLTSL REFISRYEQG LEQRREEERK EDFNSYNLQP FLQTKEPVEE  600
QCRRLYTLTI FRIFQGELAQ SYNYLGLKTY EEGAISRFLV RKCGNENEKH AVTFTASNLN  660
ASCSCQMFEY EGLLCRHILK VFNLLDIREL PSRYILHRWT KNAEFGFVRD VESGVTSQDL  720
KALMIWSLRE AASKYIEFGT SSLEKYKLAY EIMREGGKKL CWQR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp3g05170

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF360270	0.0	AF360270.1 Arabidopsis thaliana unknown protein (At3g06250) mRNA, complete cds.
GenBank	ATAC018907	0.0	AC018907.5 Arabidopsis thaliana chromosome III BAC F28L1 genomic sequence, complete sequence.
GenBank	AY150446	0.0	AY150446.1 Arabidopsis thaliana unknown protein (At3g06250) mRNA, complete cds.
GenBank	CP002686	0.0	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006407967.1	0.0	protein FAR1-RELATED SEQUENCE 7 isoform X2
Refseq	XP_024014852.1	0.0	protein FAR1-RELATED SEQUENCE 7 isoform X1
Refseq	XP_024014853.1	0.0	protein FAR1-RELATED SEQUENCE 7 isoform X1
Refseq	XP_024014854.1	0.0	protein FAR1-RELATED SEQUENCE 7 isoform X1
Refseq	XP_024014855.1	0.0	protein FAR1-RELATED SEQUENCE 7 isoform X1
Swissprot	Q9M8J3	0.0	FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBL	V4LFZ7	0.0	V4LFZ7_EUTSA; Uncharacterized protein
STRING	XP_006407967.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5730	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	0.0	FAR1-related sequence 7

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]