PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g06590
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family CO-like
Protein Properties Length: 369aa    MW: 40410.4 Da    PI: 5.9292
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g06590genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.81.7e-06444539
   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
               +C+ ++e++   +C+++  +lC +C  + H+       H++
  Tp3g06590  4 MCDFCGEQRSMVYCRSDAACLCLSCDRSVHSAnalskrHSR 44
               6*****************************65677777765 PP
2zf-B_box22.22.9e-074695440
   zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.............Htvv 40
                +C++++ ++++  C + ++ lC++C  ++H++             H+++
  Tp3g06590 46 LVCERCNAQPATVRCVEERVSLCQNCDWSGHNNnnnnnssssssnnHKRQ 95
               68*****************************8877777777777777765 PP
3CCT60.46.1e-21312355144
        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                R++a++RYkeK+k RkF+K++rY+sRKa+A+ R RvKGrFvk+ 
  Tp3g06590 312 RNNAVMRYKEKKKARKFDKRVRYASRKARADVRRRVKGRFVKAG 355
                99***************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.798147IPR000315B-box-type zinc finger
CDDcd000218.13E-8447No hitNo description
SMARTSM003361.1E-8447IPR000315B-box-type zinc finger
PROSITE profilePS501198.9164397IPR000315B-box-type zinc finger
CDDcd000211.63E-54776No hitNo description
SMARTSM003361.24897IPR000315B-box-type zinc finger
PfamPF062031.0E-15312354IPR010402CCT domain
PROSITE profilePS5101715.338312354IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SVHSANALSK RHSRTLVCER CNAQPATVRC  60
VEERVSLCQN CDWSGHNNNN NNNSSSSSSN NHKRQTISCY SGCPSSSELA SIWSFCLDLA  120
GQSVCEQEMG MMNIDDDGQT NQNCNEDKKD VVVGSSSRPE TSSAAQANPS VAKDVGVCED  180
DFYGNLGMDE VDLALENYEE LFGTAFNPSG ELFGQSGIDN LFQKHQAAPE GGNSVQPAGS  240
NDSFMSSKTE PIICFTSKPA HSNISFSGVT GESSAGDFQE CGASSSMQLS GEPPWYPQTS  300
QDNNACSHSV TRNNAVMRYK EKKKARKFDK RVRYASRKAR ADVRRRVKGR FVKAGEAYDY  360
DPLTPTRSY
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g06590
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3169340.0AK316934.1 Arabidopsis thaliana AT3G07650 mRNA, complete cds, clone: RAFL14-22-K23.
GenBankBT0294900.0BT029490.1 Arabidopsis thaliana At3g07650 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407812.10.0zinc finger protein CONSTANS-LIKE 9
SwissprotQ9SSE50.0COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLV4LFJ10.0V4LFJ1_EUTSA; Uncharacterized protein
STRINGXP_006407811.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16822786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.40.0CONSTANS-like 9