PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g07750
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB
Protein Properties Length: 502aa    MW: 55789.4 Da    PI: 8.5186
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g07750genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.12.7e-1575121148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEde l +av  + g++Wk+Ia+ +   R++ qc +rwqk+l
        Tp3g07750  75 KGGWTPEEDETLRQAVGTFKGKCWKRIAEFFS-SRSEVQCLHRWQKVL 121
                      688*****************************.************986 PP
2Myb_DNA-binding55.99.8e-18127173148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W+++Ede++v++v ++G+  W+ I++ ++ gR +kqc++rw+++l
        Tp3g07750 127 KGPWSQQEDEKIVELVDKYGPSKWSIISKSLP-GRIGKQCRERWHNHL 173
                      79******************************.*************97 PP
3Myb_DNA-binding56.46.7e-18179222146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++WT+eE++ l +a+  +G++ W+ Ia+ ++ gRt++++k++w++
        Tp3g07750 179 KDAWTPEEELALMNAHLIHGNK-WAEIAKVLP-GRTDNSIKNHWNS 222
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.72570121IPR017930Myb domain
SuperFamilySSF466892.73E-1472130IPR009057Homeodomain-like
SMARTSM007171.5E-1374123IPR001005SANT/Myb domain
PfamPF002499.8E-1475121IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.7E-2177133IPR009057Homeodomain-like
CDDcd001671.10E-1178121No hitNo description
PROSITE profilePS5129430.776122177IPR017930Myb domain
SuperFamilySSF466892.02E-31124220IPR009057Homeodomain-like
SMARTSM007171.2E-16126175IPR001005SANT/Myb domain
PfamPF002491.1E-16127173IPR001005SANT/Myb domain
CDDcd001675.57E-14129173No hitNo description
Gene3DG3DSA:1.10.10.603.2E-26134179IPR009057Homeodomain-like
PROSITE profilePS5129421.917178228IPR017930Myb domain
SMARTSM007173.1E-16178226IPR001005SANT/Myb domain
PfamPF002494.3E-16179222IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-23180227IPR009057Homeodomain-like
CDDcd001673.40E-12181224No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MSSNLNPPAS SPDVEEKGKV KMEDECIENK QSTAASSSSV SEGSGSSFLK SPAVASPATV  60
SPSHRRKSGP IRRAKGGWTP EEDETLRQAV GTFKGKCWKR IAEFFSSRSE VQCLHRWQKV  120
LDPELIKGPW SQQEDEKIVE LVDKYGPSKW SIISKSLPGR IGKQCRERWH NHLNPGINKD  180
AWTPEEELAL MNAHLIHGNK WAEIAKVLPG RTDNSIKNHW NSSLKKKSQF FLANGGLPPA  240
AAKNGVPDRA TKRPSSVHKR DSDSVAQTSS VTRQINKPDE DGKDQLNLSI PLEEVVAASP  300
MTGVSEYAPS PQLPINPEPS PENGYHLYYN KPQTEYYMAS EADKQRMYGY ECGCSPSASP  360
VIFFTPPPCR KEYSNGLAPT SPESFLREAA RTFPNTPSIF RKRKRKVVVS DNNKVAKTEE  420
EVKEVVDEKV NDISESPDCE EKQNNGSSAY NLSPPYRIRS KRTAVFKSRQ LEFISAEEEK  480
GGDETKSSEK DKLLDGVSQL PS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-62742275158MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-62742275158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1400405RKRKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g07750
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene, auxin (IAA), jasmonic acid (JA) and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407683.10.0transcription factor MYB3R-3
SwissprotQ8H1P90.0MB3R3_ARATH; Transcription factor MYB3R-3
TrEMBLV4NR950.0V4NR95_EUTSA; Uncharacterized protein
STRINGXP_006407683.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16672887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09370.10.0myb domain protein 3r-3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]