PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g07810
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB_related
Protein Properties Length: 473aa    MW: 53760 Da    PI: 4.8278
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g07810genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.12.3e-09310351144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      r rW++++ el++++++++G++  + + + ++ +Rt+ q+k+++
        Tp3g07810 310 RTRWSKQDTELFYEGIQEFGSN-LSMVQQLFP-NRTRQQIKLKF 351
                      78******************99.*********.*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR003013.1E-14821IPR013126Heat shock protein 70 family
Gene3DG3DSA:3.30.420.401.2E-27870No hitNo description
SuperFamilySSF530673.63E-20872No hitNo description
PfamPF000125.8E-24973IPR013126Heat shock protein 70 family
PRINTSPR003013.1E-143648IPR013126Heat shock protein 70 family
PRINTSPR003013.1E-145866IPR013126Heat shock protein 70 family
PfamPF159635.8E-25303387No hitNo description
Gene3DG3DSA:1.10.10.608.4E-7306352IPR009057Homeodomain-like
PROSITE profilePS512939.888308359IPR017884SANT domain
SMARTSM007172.4E-8309357IPR001005SANT/Myb domain
SuperFamilySSF466891.79E-9311361IPR009057Homeodomain-like
CDDcd001674.00E-5312352No hitNo description
Gene3DG3DSA:3.30.420.401.2E-27379392No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MAGKGEGPAI GIDLGTTYTC VEVWQHDRVE IIANDQRNRT MPSYVAFTDS ERLIGDAAKN  60
QVAMNPINTV FEQHTGKFQP KRRLLDTVIE EPKSHYSIDD TGYFTTGANQ SESMVNVESR  120
NDFNTNTTFY REFQEEEANI PEVPRETVPG GWEHEHHVVS PNTNNTVIGE QGSCLGDTVE  180
ETQSGRESKK GNSKRATGRK RKITSEEESN KSGENPEKNF KHSSRRQRNR TLEKELLETP  240
DDGIKFLPIR DMLRLVEYRE WMDKKEAKGA AAVPRTQESG PKKVIQNQET NIVKPDSPVN  300
YQTYMNKTSR TRWSKQDTEL FYEGIQEFGS NLSMVQQLFP NRTRQQIKLK FKLEERRYPL  360
KLNDALSTRS KHLIHFHTVI KKLQQEAAAA REAEEEGDEE DEAGAEAETT TDVPQNEEPA  420
AKFEKTERAG DGVAGIKESD GGDIENDVRS NGGDECDYNE GDDDFWNSYK SDM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3cqx_A2e-3211023104Heat shock cognate 71 kDa protein
3cqx_B2e-3211023104Heat shock cognate 71 kDa protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g07810
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529682e-82AK352968.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-12-H18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024005819.10.0transcription factor TFIIIB component B'' homolog
TrEMBLV4P1I11e-180V4P1I1_EUTSA; Uncharacterized protein
STRINGXP_006411718.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51542535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.11e-157MYB_related family protein