PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g08340
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family Trihelix
Protein Properties Length: 537aa    MW: 58725.4 Da    PI: 6.8631
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g08340genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix63.54.7e-20155241186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                +W++  + +L++a++++ ++l+rg+l++ +We+v++ +  r +++ +s +qCk+k++nl+kryk ++++++++  +s s++p+f+++e
  Tp3g08340 155 EWSDAAITCLLDAYSDKFTQLNRGNLRGRDWEDVASTVseRCEKLMKSVEQCKNKIDNLKKRYKLERHRMSSG-GTSASHWPWFKKME 241
                5*************************************888889****************************9.666779*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.7E-21153243No hitNo description
Gene3DG3DSA:3.40.1160.102.2E-65288529IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536336.55E-53296529IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042543.42E-118298530No hitNo description
PfamPF006969.1E-24299509IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MASCDDDFSL LGDDQSNPNQ QHHHHQLLHH APYAPRRFTP KPSNQIHVSH HQRNGDEDDE  60
NDVVVEASSA FHGVNPFSAD ENSNPYDNNA AVDGDEDLDA NRSRIGGVRL EKRQSQDELS  120
DGGTTNGGET MPYGSFKRPR TSSSSAGEYR KDREEWSDAA ITCLLDAYSD KFTQLNRGNL  180
RGRDWEDVAS TVSERCEKLM KSVEQCKNKI DNLKKRYKLE RHRMSSGGTS ASHWPWFKKM  240
EEIVGNSLAT KGASDDDRSG SSLGNAVKPA RRYPLVTYNP GVQINNVKSK ATSNPRWRRV  300
VLKISGAALA CTGPNNIDPK VVNLIAREVA MACRLGVEVA IVVGSRNFFC GGTWITATGL  360
DRTTAYHISM MASVMNSVLL QSSLEKMGVQ ARLQTAIAVQ GVGEPYNRQR ATRHLDKGRV  420
VIFGGIGATL GNPLLSSDAS AALRAIDINA EAMVKGTNVD GVYDSHSQDS NVTFEHITFH  480
DLASRGLTTM DSMALNFCEE NSIPVVVFNF LEAGNITKAL CGEQVGTLID RPGRGVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A1e-572895291239Uridylate kinase
3ek5_B1e-572895291239Uridylate kinase
3ek5_C1e-572895291239Uridylate kinase
3ek5_D1e-572895291239Uridylate kinase
3ek5_E1e-572895291239Uridylate kinase
3ek5_F1e-572895291239Uridylate kinase
3ek6_A1e-572895291239Uridylate kinase
3ek6_B1e-572895291239Uridylate kinase
3ek6_C1e-572895291239Uridylate kinase
3ek6_D1e-572895291239Uridylate kinase
3ek6_E1e-572895291239Uridylate kinase
3ek6_F1e-572895291239Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g08340
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3754310.0AF375431.1 Arabidopsis thaliana AT3g10030/T22K18_15 mRNA, complete cds.
GenBankAY1206870.0AY120687.1 Arabidopsis thaliana AT3g10030/T22K18_15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407613.10.0uncharacterized protein LOC18023904 isoform X2
TrEMBLV4NR260.0V4NR26_EUTSA; Uncharacterized protein
STRINGXP_006407614.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93052631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein