PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g08900
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB_related
Protein Properties Length: 182aa    MW: 20984.7 Da    PI: 7.7332
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g08900genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.32.4e-1590135348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +WT+eE+ ++ ++  ++G+g+Wk I+r+   +Rt+ q+ s+ qkyl
        Tp3g08900  90 PWTEEEHRRFQEGLDKFGKGDWKNISRMSVRTRTPTQVASHAQKYL 135
                      8********************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0071714253IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-1181135IPR009057Homeodomain-like
PROSITE profilePS5129418.96483139IPR017930Myb domain
SuperFamilySSF466897.9E-1885140IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-1686137IPR006447Myb domain, plants
SMARTSM007173.4E-1187137IPR001005SANT/Myb domain
PfamPF002492.2E-1290135IPR001005SANT/Myb domain
CDDcd001678.10E-1190135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MVSMHWSKHD DKRFESALVL FTEDYPNRFA TITDHLQIPV RDVIQYYEAL VHDIDLIKSD  60
QVAVNDYPDC SGGISSKTKH VKKDQKRGTP WTEEEHRRFQ EGLDKFGKGD WKNISRMSVR  120
TRTPTQVASH AQKYLLRLES KIKKCSSIHD ISLVPDVVDN VNVPRSDLDS TMGQPQFGQQ  180
MP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18086VKKDQKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g08900
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009122731.14e-76PREDICTED: transcription factor DIVARICATA-like
RefseqXP_013730893.13e-76transcription factor DIVARICATA-like
TrEMBLM4EZ879e-75M4EZ87_BRARP; Uncharacterized protein
STRINGBra034130.1-P1e-75(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51272750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09450.11e-48MYB_related family protein