PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g09420
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family Trihelix
Protein Properties Length: 289aa    MW: 32515.2 Da    PI: 4.7411
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g09420genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix461.4e-1428108286
   trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                W+++ + +Liea  ++  +l+rg+l++++W+ev++++   ++ g  ++ +qCk++++ l+k+yk +k+  ++       t+ +fd+l+
  Tp3g09420  28 WSEDATATLIEAWGDRYVHLNRGNLRQNDWKEVADAVnssHANGRPKTDVQCKNRIDTLKKKYKTEKAKPSS-------TWCFFDRLD 108
                *************************************999999999*******************9998875.......699999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.6E-2526109No hitNo description
SMARTSM005956.7E-435115IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
METTPETQSK SQSQTGSQRL PAGREDWWSE DATATLIEAW GDRYVHLNRG NLRQNDWKEV  60
ADAVNSSHAN GRPKTDVQCK NRIDTLKKKY KTEKAKPSST WCFFDRLDFL IGPVAKKSGG  120
TGAVKSALMN PNAGSKSSGS SLDDDDDDDD DDVGDWGFVV RKHRRVEDVD PSEGSSCREL  180
ATAILKLGEV YERIEGAKQQ MMIELEKQRM EAAKELELQR MNMLMEMQME LEKSKLGKRR  240
AASVELLSAF VLSIRGFGTI SSDETLSSYS WFCFQGYEYS SCDDEITET
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g09420
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3535510.0AK353551.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-52-B11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407472.11e-148trihelix transcription factor ASIL2
TrEMBLE4MYF41e-146E4MYF4_EUTHA; mRNA, clone: RTFL01-52-B11
TrEMBLV4LEM31e-146V4LEM3_EUTSA; Uncharacterized protein
STRINGXP_006407472.11e-147(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49262141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11100.11e-112sequence-specific DNA binding transcription factors