PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g09550
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB
Protein Properties Length: 255aa    MW: 29192.8 Da    PI: 6.8894
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g09550genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-073176346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                      WT+eE + + +a + +  +   +W  Ia++++ g+t  ++   + k
        Tp3g09550 31 VWTKEENKMFERALAIYTEDspdRWFEIASMIP-GKTVFDVMKQYSK 76
                     7********************************.***9999888876 PP
2Myb_DNA-binding409.3e-13127171347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ +  ++G+g+W+ I+r +   +t+ q+ s+ qky
        Tp3g09550 127 PWTEEEHRRFLLGLLKYGKGDWRNISRNFVVSKTPTQVASHAQKY 171
                      8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.7812780IPR017884SANT domain
SMARTSM007172.0E-82880IPR001005SANT/Myb domain
SuperFamilySSF466891.52E-113085IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.7E-43076IPR009057Homeodomain-like
PfamPF002491.3E-63176IPR001005SANT/Myb domain
CDDcd001672.12E-73277No hitNo description
PROSITE profilePS5129419.439120176IPR017930Myb domain
SuperFamilySSF466892.28E-15122175IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-17123175IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.0E-11124176IPR009057Homeodomain-like
SMARTSM007171.7E-10124174IPR001005SANT/Myb domain
PfamPF002494.0E-10127171IPR001005SANT/Myb domain
CDDcd001678.16E-9127171No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
METLHPLSYV PISDHRFVAL EMMTLQSSSS VWTKEENKMF ERALAIYTED SPDRWFEIAS  60
MIPGKTVFDV MKQYSKLEED VFDIEAGRVP IPGYPTASSP FGFDPDTCRK RPNGARGSDH  120
DRKKGVPWTE EEHRRFLLGL LKYGKGDWRN ISRNFVVSKT PTQVASHAQK YYQRQLSGAK  180
DKRRPSIHDI TTVNLLNANR NRSFSDHRDI LPDLGFIDKD NAEEGLTYMS QNLSSENLFS  240
PSSSPFDAAI NFCWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1722109188RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00347DAPTransfer from AT3G11280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g09550
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0561800.0AY056180.1 Arabidopsis thaliana putative MYB-family transcription factor (At3g11280) mRNA, complete cds.
GenBankAY0912650.0AY091265.1 Arabidopsis thaliana putative MYB-family transcription factor (At3g11280) mRNA, complete cds.
GenBankAY5503080.0AY550308.1 Arabidopsis thaliana MYB transcription factor (At3g11280) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407460.11e-166transcription factor DIVARICATA
SwissprotQ8S9H74e-73DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A3N6Q5511e-166A0A3N6Q551_BRACR; Uncharacterized protein
STRINGXP_006407460.11e-165(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43402657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11280.21e-154MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]