PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g09820
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family B3
Protein Properties Length: 257aa    MW: 28835.9 Da    PI: 7.4973
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g09820genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B367.71.6e-2132113167
                EEEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHH CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgryvltkGWke 67 
                f+k ltpsdv+k++rlv+pk++ae++                + +e+++ l++ede+g+ W+++++y+++s++yvltkGW++
  Tp3g09820  32 FEKSLTPSDVGKLNRLVIPKQHAEKYfplnnggggggddvtAETTEKGMLLSFEDETGKCWKFRYSYWNSSQSYVLTKGWSR 113
                99*********************************999998777789*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-2725113IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-2029113IPR015300DNA-binding pseudobarrel domain
CDDcd100175.40E-1931121No hitNo description
SMARTSM010191.0E-932150IPR003340B3 DNA binding domain
PfamPF023621.2E-1832113IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MSVNHYPRDI NHNNLPLHHH QNDGVSHRES LFEKSLTPSD VGKLNRLVIP KQHAEKYFPL  60
NNGGGGGGDD VTAETTEKGM LLSFEDETGK CWKFRYSYWN SSQSYVLTKG WSRGRCFFQR  120
HLFDLHRLFI GWRRRGEASS SPAVSVVSQE ARVNTTAYWN GLTTPYRQVH ASASSYPNIH  180
QEHSHYGAVA ETPTVVAGSS RTVRLFGVNL ECHGDVVEPP PCPDGYNGQH IYYYSTPHPM  240
NISFAGEAME QVGDGRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-37251351113B3 domain-containing transcription factor NGA1
5os9_B5e-37251351113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g09820
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4410761e-117AJ441076.1 Arabidopsis thaliana mRNA for putative auxin response factor 32 (arf32 gene).
GenBankAK1752811e-117AK175281.1 Arabidopsis thaliana mRNA for putative DNA binding protein, complete cds, clone: RAFL21-71-N13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024015755.11e-157B3 domain-containing protein At3g11580
SwissprotQ8RYD31e-139Y3158_ARATH; B3 domain-containing protein At3g11580
TrEMBLA0A398AUU71e-154A0A398AUU7_BRACM; Uncharacterized protein
TrEMBLM4FIU41e-154M4FIU4_BRARP; Uncharacterized protein
STRINGBra041023.1-P1e-155(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11580.11e-131B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]