PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g10030
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family M-type_MADS
Protein Properties Length: 383aa    MW: 44087 Da    PI: 6.0242
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g10030genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.91.3e-131251443
               -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
     SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                n+s r +++ kRr g+ KK  EL +LCd+++++ii s++
  Tp3g10030 12 ANESARAISLKKRRLGLVKKVRELTILCDVKACLIISSPK 51
               6999*********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.8E-18160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.47151IPR002100Transcription factor, MADS-box
CDDcd002664.45E-25285No hitNo description
SuperFamilySSF554552.88E-19393IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-7323IPR002100Transcription factor, MADS-box
PfamPF003192.7E-131251IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-72338IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-73859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MARKKLNLAL VANESARAIS LKKRRLGLVK KVRELTILCD VKACLIISSP KDAEPMAWPS  60
RDAARDLLND YFALPEFERK KKEMSHESYL TEKTMRVREQ LRRTQKKNME YAIDQLMMQL  120
NAGRGLADLN LNEIYSLLSF LKHEIMHLRT MLDFMHHSPL RDPPVYPSEA QFEDLRTTTN  180
EVLMIEDGQN EDTTTKTDDV GQRISIGTLR ENKSYYLMDQ WFFPPSGSPN SQMDQQTEME  240
MACYNESPDP RCSHPYGGRY QGSSSNGNPN MEMEPIVPPM MMTFQGLAGP LHQRLQHHHN  300
MNDDPMMVTA MSQPRLHFMC PEEQSNINVG NSQFHRSTNT MTTIDGLRQE PPPLNEATVE  360
EDNVDATSLD INREWPGINN HHF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKLNLALVANESARAISLKKRR
2101107RRTQKKN
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g10030
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407408.11e-154agamous-like MADS-box protein AGL17
TrEMBLV4NQI01e-153V4NQI0_EUTSA; Uncharacterized protein
STRINGXP_006407408.11e-154(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47241446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40210.12e-95AGAMOUS-like 48