PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g10040
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family M-type_MADS
Protein Properties Length: 444aa    MW: 50662.8 Da    PI: 5.9159
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g10040genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.61.4e-121551743
               HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
     SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                 r  t+ kR+ g+ KK  EL +LCd+++++ii s++
  Tp3g10040 15 NARALTLKKRKLGLVKKVRELTILCDVKACLIISSPN 51
               56899*****************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.2E-19160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.825151IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.15E-19393IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-6323IPR002100Transcription factor, MADS-box
CDDcd002666.76E-24381No hitNo description
PfamPF003191.1E-121351IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-62338IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-63859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MVRKKVDLAL VVDENARALT LKKRKLGLVK KVRELTILCD VKACLIISSP NEAEPMVWPS  60
REAAGELLDD YFALPEYEKK KKETTVESYL KENTLKLHEQ LKKTQKKNKE RMIDQLMLQL  120
STGRGLADLN LSEIYSLLSF SKDGITRLRK MLYFMQFPPL CDPPENPFEM QSEEPKTTTS  180
DVFMLQGNQE DEGAQRISIG TTIRDNQSYY LVDKWVFPSS EQSNPQIHQN IGMKMGHDNK  240
NPNFQWYLPY QGSSSNGNPN MEMEPIVPPT MTFHDLMGLV SQPLQHHHNI NDNQIMATGM  300
SQPSQYQSGF TNREERSNIN NGDSQFHWSS NTMMTNNGLR QEPPPPYGAS SDQGHGRANN  360
QIIATGMIQP SQYQFDFMNC EERSNTNNDN SQFHWSSNTM MTNDGLRQEP PPPNDATTEE  420
GHGRANASSF GIDMDWPGFK NHHF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVDLALVVDENARALTLKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g10040
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407408.11e-150agamous-like MADS-box protein AGL17
TrEMBLV4NQI01e-149V4NQI0_EUTSA; Uncharacterized protein
STRINGXP_006407408.11e-149(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47241446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40210.12e-86AGAMOUS-like 48