PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g10360
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C3H
Protein Properties Length: 249aa    MW: 25931.1 Da    PI: 10.0146
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g10360genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.58.6e-073962225
               -S---SGGGGTS--TTTTT-SS-S CS
    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
               k ++C  f+ t  C++G++C+F H
  Tp3g10360 39 KSKPCTKFFSTSGCPFGENCHFLH 62
               7789******************** PP
2zf-CCCH33.47.5e-11215240127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +kt++C +f + G C +GdrC+FaHg+
  Tp3g10360 215 FKTKICERFIK-GSCTFGDRCHFAHGE 240
                69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.843765IPR000571Zinc finger, CCCH-type
SMARTSM003560.213764IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-63864IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-53962IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-83962IPR000571Zinc finger, CCCH-type
SuperFamilySSF547913.21E-15102183IPR004088K Homology domain, type 1
SMARTSM003221.8E-11112182IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.104.3E-16112181IPR004088K Homology domain, type 1
PROSITE profilePS5008414.55113177IPR004088K Homology domain, type 1
PfamPF000134.8E-12115179IPR004088K Homology domain, type 1
CDDcd001052.56E-13115177No hitNo description
Gene3DG3DSA:4.10.1000.101.5E-15209244IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.521214241IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-8214244IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-8214240IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-7215240IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MDTRKRGRPE AGSYNSNGGG GFKKSKQEME SYSTGLGSKS KPCTKFFSTS GCPFGENCHF  60
LHYVPGGYNA VAQMTNMAPM PQVSRNMQGS GGGGRFSGRG ESGPGHVSSF GASATAKISV  120
DASLAGAIIG KGGVSSKQIC RQTGAKLSIQ DHERDPNLKN IELEGTFEQI NEASAMVREL  180
IGRLNSAARK PPGGGGGGVG GGMGSEGKPH PGSNFKTKIC ERFIKGSCTF GDRCHFAHGE  240
AELRRSGMA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g10360
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3535310.0AK353531.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-50-B10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407365.11e-157zinc finger CCCH domain-containing protein 36
SwissprotQ9C7C31e-150C3H36_ARATH; Zinc finger CCCH domain-containing protein 36
TrEMBLE4MYD41e-156E4MYD4_EUTHA; mRNA, clone: RTFL01-50-B10
TrEMBLV4M8U61e-156V4M8U6_EUTSA; Uncharacterized protein
STRINGXP_006407365.11e-156(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23362875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-127C3H family protein
Publications ? help Back to Top
  1. Yan Z,Jia J,Yan X,Shi H,Han Y
    Arabidopsis KHZ1 and KHZ2, two novel non-tandem CCCH zinc-finger and K-homolog domain proteins, have redundant roles in the regulation of flowering and senescence.
    Plant Mol. Biol., 2017. 95(6): p. 549-565
    [PMID:29076025]