PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g10610
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family NF-YC
Protein Properties Length: 290aa    MW: 32337 Da    PI: 4.9277
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g10610genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC57.92.3e-186861898
      NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
               ++++P arikki++adedv +i+  +Pvl+sk+ elf+ +l  r++  + e   +t+    ++ +v+r ++fdfl ++v +
  Tp3g10610  6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKSLELFLQDLCDRTYEITLERGAKTVSSLHLKHCVERYNVFDFLREVVGK 86
               5789************************************************************************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.7E-25372IPR009072Histone-fold
SuperFamilySSF471134.01E-19488IPR009072Histone-fold
PfamPF008082.7E-19871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKSLE LFLQDLCDRT YEITLERGAK  60
TVSSLHLKHC VERYNVFDFL REVVGKVPDY GHAQGQGHGD VTMDDRSISK RRKPISDEVN  120
DSDEEYKKTK TQEVGNAKHS GRGSRGRGRG RGRGGRAARA AERENLNREM ELESAMMEQP  180
PPQDNIQMHM SVSSPKENEK KDVDSGIAAS NEDTKQQIQS PKEGVDFDLN AESLDLNETK  240
LAPIAAADTA TASEEYPGWP MMEVGKIDPA QFASLGKRID EDEEDYDEEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A9e-23272575Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144153RGRGRGRGRG
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g10610
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3530670.0AK353067.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-20-D23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407330.11e-168dr1-associated corepressor
TrEMBLA0A078IKW11e-169A0A078IKW1_BRANA; BnaA01g30580D protein
STRINGXP_006407330.11e-168(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35062458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.11e-142nuclear factor Y, subunit C11