PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g11190
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family G2-like
Protein Properties Length: 444aa    MW: 49379 Da    PI: 6.2037
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g11190genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.88.8e-32237291155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                kpr+rWtpeLHe+F++ v++L G+ekAtPk++l+lm+v+gLt++hvkSHLQkYRl
  Tp3g11190 237 KPRMRWTPELHESFLNSVNKLEGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRL 291
                79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-29235292IPR009057Homeodomain-like
SuperFamilySSF466891.2E-16236291IPR009057Homeodomain-like
TIGRFAMsTIGR015573.9E-24237292IPR006447Myb domain, plants
PfamPF002493.5E-8239290IPR001005SANT/Myb domain
PfamPF143793.5E-22327374IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MNRHRLVSTA HDECNKGIRQ ACSSSLSPAH NFLNVQPETM KSPFIRSQSP DSPGQRWPKN  60
SSQGTFSRSS TFCTNLYLSS SSTSETQKHM GNSLPFLPDP SAYSHSASGV ESARSPYVFS  120
EDLGNPFDGD NSGSLVKDFL NLSGDGCSNG GFHDLDCSND SYCLSDQMEL QFLSDELELA  180
ITDRAETPRL DEIYETPLAS SNQVTGLSPS QRCVAGAMSI DVVSSHPSPG SAAANHKPRM  240
RWTPELHESF LNSVNKLEGP EKATPKAVLK LMNVEGLTIY HVKSHLQKYR LAKYMPEKKE  300
EKKNVNSEVK RLALSNSEVD EKKRGAIQLT EALRMQMEVQ KQLHEQLEVQ RVLQLRIEEH  360
AKYLEKMLEE QRKTGRLISS SSSQTLISPS DDSIPDCQNM SKAEVSMPQA SSSEKNIASE  420
TEDDKCESPQ KRRRLENKAE SEIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-24237294259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-24237294259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-24237294259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-24237294259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-24237294259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-24237294259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-24237294259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-24237294259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1430434KRRRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00354DAPTransfer from AT3G13040Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g11190
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0508890.0AY050889.1 Arabidopsis thaliana unknown protein (At3g13040) mRNA, complete cds.
GenBankAY0966740.0AY096674.1 Arabidopsis thaliana unknown protein (At3g13040) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020886314.10.0myb family transcription factor PHL6
SwissprotQ949U20.0PHL6_ARATH; Myb family transcription factor PHL6
TrEMBLD7L0M90.0D7L0M9_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.3__1373__AT3G13040.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67862744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.20.0G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]