PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g11750
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB
Protein Properties Length: 251aa    MW: 28161.6 Da    PI: 7.1669
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g11750genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.79.5e-172673148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEde+lv  +k+ G g+W++ +++ g+ R++k+c++rw +yl
        Tp3g11750 26 RGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYL 73
                     89******************************99************97 PP
2Myb_DNA-binding50.93.5e-1680124248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      g  T++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
        Tp3g11750  80 GGITPDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 124
                      667******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.8E-221776IPR009057Homeodomain-like
PROSITE profilePS5129416.5032173IPR017930Myb domain
SuperFamilySSF466891.14E-2922120IPR009057Homeodomain-like
SMARTSM007172.0E-132575IPR001005SANT/Myb domain
PfamPF002497.2E-152673IPR001005SANT/Myb domain
CDDcd001671.35E-112873No hitNo description
PROSITE profilePS5129424.93974128IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.3E-2577128IPR009057Homeodomain-like
SMARTSM007171.7E-1578126IPR001005SANT/Myb domain
PfamPF002496.6E-1580124IPR001005SANT/Myb domain
CDDcd001671.18E-1283124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0010468Biological Processregulation of gene expression
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MTSSGGKKPV TKRMMTPCCM KMGMKRGPWT VEEDEILVSF IKKEGEGRWR SLPKRAGLLR  60
CGKSCRLRWM NYLRPSVKRG GITPDEEDLI LRLHRLLGNR WSLIAGRIPG RTDNEIKNYW  120
NTHLRKKLLR EGIDPQTHKP LDANNTHKPG EEVSGGQNLL EPNSSSHNDD TTVSSGNGAS  180
KISISVFGDE DDEDFGFCYD DKFSSFLNSL INDDPFDSNI PISQPLKTHD STDEIVGASS  240
SSGHDQRPED M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-27241285108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g11750
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195870.0AY519587.1 Arabidopsis thaliana MYB transcription factor (At3g13540) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009146480.11e-162PREDICTED: transcription repressor MYB5
SwissprotQ388501e-145MYB5_ARATH; Transcription repressor MYB5
TrEMBLM4EF611e-161M4EF61_BRARP; Uncharacterized protein
STRINGBra027423.1-P1e-162(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-135myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]