PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp3g12070

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

LBD

Protein Properties

Length: 266aa MW: 30361.9 Da PI: 6.2624

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp3g12070	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.1	8.2e-40	33	132	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 aCaaCk++rrkCa+dC lapyfp++++++f n+hklFG+sn++k++k+l++ e+++am++++++++ara+dP++G++++i+klq q+e +++el+ + ++ Tp3g12070 33 ACAACKYQRRKCAPDCLLAPYFPHDRHRQFLNAHKLFGVSNITKIIKDLSPPEKDAAMHTIMFQSDARANDPIEGCYSIIRKLQYQIEYSRNELDIVLQQ 132 7********************************************************************************************9988776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.982	32	133	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.8E-36	33	128	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MPSGKPSSVF PLHPKPTSLK PSSSTSNNST NQACAACKYQ RRKCAPDCLL APYFPHDRHR 60 QFLNAHKLFG VSNITKIIKD LSPPEKDAAM HTIMFQSDAR ANDPIEGCYS IIRKLQYQIE 120 YSRNELDIVL QQLAVFRDRA HNHHQEPHIQ MQEPEDISSF SSSCDLNNTT SIPYNYPLHH 180 VQEPNQQQQQ QYCSSGNFNG LQEDMWCLQL QDSSTTVNMK GGFIVECEDV KPVEEVSSER 240 HEFEHHDGFV EERKLDLPSA QFIISS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-27	23	133	1	111	LOB family transfactor Ramosa2.1
5ly0_B	4e-27	23	133	1	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp3g12070

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC237328	0.0	AC237328.1 Arabidopsis lyrata clone JGIFAFI-41L7, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006298101.1	1e-166	LOB domain-containing protein 22
Refseq	XP_013640057.1	1e-166	LOB domain-containing protein 22
Refseq	XP_023642605.1	1e-166	LOB domain-containing protein 22
Swissprot	Q9LRW1	1e-166	LBD22_ARATH; LOB domain-containing protein 22
TrEMBL	R0HMS1	1e-164	R0HMS1_9BRAS; Uncharacterized protein
TrEMBL	R0I3Y5	1e-165	R0I3Y5_9BRAS; Uncharacterized protein
STRING	XP_006298101.1	1e-165	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6498	26	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	1e-158	LOB domain-containing protein 22

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]